Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin
Kljajic, M., Gerber, H.-D., Heine, A., Klebe, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thermolysin | A [auth E] | 316 | Geobacillus stearothermophilus | Mutation(s): 0  Gene Names: nprS, nprM EC: 3.4.24.27 | |
UniProt | |||||
Find proteins for P43133 (Geobacillus stearothermophilus) Explore P43133  Go to UniProtKB:  P43133 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P43133 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ORK (Subject of Investigation/LOI) Query on ORK | M [auth E] | (2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid C25 H34 N3 O7 P PREBTZMCCRSQJI-NYVOZVTQSA-N | |||
CS Query on CS | G [auth E], H [auth E] | CESIUM ION Cs NCMHKCKGHRPLCM-UHFFFAOYSA-N | |||
DMS Query on DMS | I [auth E], J [auth E], K [auth E], L [auth E] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ZN Query on ZN | B [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CA Query on CA | C [auth E], D [auth E], E, F [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 92.606 | α = 90 |
b = 92.606 | β = 90 |
c = 130.637 | γ = 120 |
Software Name | Purpose |
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Coot | model building |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |