Crystal structure of tomato spotted wilt virus G N reveals a dimer complex formation and evolutionary link to animal-infecting viruses
Bahat, Y., Alter, J., Dessau, M.(2020) Proc Natl Acad Sci U S A 117: 26237
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2020) Proc Natl Acad Sci U S A 117: 26237
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycoprotein | A [auth B], B [auth D], C [auth A], D [auth C] | 288 | Orthotospovirus tomatomaculae | Mutation(s): 0  Gene Names: Gn, Gc | ![]() |
UniProt | |||||
Find proteins for P36291 (Tomato spotted wilt virus (strain Brazilian Br-01)) Explore P36291  Go to UniProtKB:  P36291 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P36291 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, G, J | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | L [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 165.992 | α = 90 |
b = 215.878 | β = 90 |
c = 146.368 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
AutoSol | phasing |