6XX1 | pdb_00006xx1

The unique CBM3-Clocl_1192 of Hungateiclostridium clariflavum

PDB DOI: https://doi.org/10.2210/pdb6XX1/pdb

Classification: CELL ADHESION
Organism(s): Acetivibrio clariflavus DSM 19732
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2020-01-26 Released: 2020-05-06
Deposition Author(s): Milana, M.V., Almog, R., Yaniv, O., Oded, L., Inna, R.G., Felix, F., Edward, A.B., Raphael, L.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free:
0.211 (Depositor), 0.213 (DCC)
R-Value Work:
0.183 (Depositor)
R-Value Observed:
0.184 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6XX1

This is version 1.1 of the entry. See complete history.

Literature

The unique CBM3-Cthe_0271 from Ruminoclostridium thermocellum and CBM3-Clocl_1192 from Hungateiclostridium clariflavum

Milana, M.V., Almog, R., Yaniv, O., Oded, L., Inna, R.G., Felix, F., Edward, A.B., Raphael, L.

To be published.

Macromolecule Content

Total Structure Weight: 67.64 kDa
Atom Count: 5,054
Modeled Residue Count: 590
Deposited Residue Count: 596
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cellulose binding domain-containing protein	A, B	148	Acetivibrio clariflavus DSM 19732	Mutation(s): 0 Gene Names: Clocl_1192
UniProt
Find proteins for G8LYV1 (Acetivibrio clariflavus (strain DSM 19732 / NBRC 101661 / EBR45)) Explore G8LYV1 Go to UniProtKB: G8LYV1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G8LYV1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Cellulose binding domain-containing protein	C, D	150	Acetivibrio clariflavus DSM 19732	Mutation(s): 0 Gene Names: Clocl_1192
UniProt
Find proteins for G8LYV1 (Acetivibrio clariflavus (strain DSM 19732 / NBRC 101661 / EBR45)) Explore G8LYV1 Go to UniProtKB: G8LYV1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G8LYV1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free: 0.211 (Depositor), 0.213 (DCC)
R-Value Work: 0.183 (Depositor)
R-Value Observed: 0.184 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.09	α = 90
b = 157.74	β = 94.41
c = 46.56	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-05-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	24/11

Revision History (Full details and data files)

Version 1.0: 2020-05-06
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.