6XTH

NMR solution structure of class IV lasso peptide felipeptin A1 from Amycolatopsis sp. YIM10


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin.

Guerrero-Garzon, J.F.Madland, E.Zehl, M.Singh, M.Rezaei, S.Aachmann, F.L.Courtade, G.Urban, E.Ruckert, C.Busche, T.Kalinowski, J.Cao, Y.R.Jiang, Y.Jiang, C.L.Selivanova, G.Zotchev, S.B.

(2020) iScience 23: 101785-101785

  • DOI: https://doi.org/10.1016/j.isci.2020.101785
  • Primary Citation of Related Structures:  
    6XTH, 6XTI

  • PubMed Abstract: 

    Heterologous expression of a biosynthesis gene cluster from Amycolatopsis sp. resulted in the discovery of two unique class IV lasso peptides, felipeptins A1 and A2. A mixture of felipeptins stimulated proliferation of cancer cells, while having no such effect on the normal cells. Detailed investigation revealed, that pre-treatment of cancer cells with a mixture of felipeptins resulted in downregulation of the tumor suppressor Rb, making the cancer cells to proliferate faster. Pre-treatment with felipeptins made cancer cells considerably more sensitive to the anticancer agent doxorubicin and re-sensitized doxorubicin-resistant cells to this drug. Structural characterization and binding experiments showed an interaction between felipeptins resulting in complex formation, which explains their synergistic effect. This discovery may open an alternative avenue in cancer treatment, helping to eliminate quiescent cells that often lead to cancer relapse.


  • Organizational Affiliation

    Department of Pharmacognosy, University of Vienna, Vienna 1090, Austria.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Felipeptin A118Amycolatopsis sp.Mutation(s): 0 
UniProt
Find proteins for A0A5P9PRQ2 (Amycolatopsis sp. YIM 10)
Explore A0A5P9PRQ2 
Go to UniProtKB:  A0A5P9PRQ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P9PRQ2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentAustriaUniversity of Vienna
Novo Nordisk FoundationDenmarkNNF18OC0032242

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-25
    Type: Initial release
  • Version 1.1: 2020-12-23
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2024-10-16
    Changes: Data collection, Database references, Structure summary