6X7F

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of transcription-translation coupling.

Wang, C.Molodtsov, V.Firlar, E.Kaelber, J.T.Blaha, G.Su, M.Ebright, R.H.

(2020) Science 369: 1359-1365

  • DOI: https://doi.org/10.1126/science.abb5317
  • Primary Citation of Related Structures:  
    6VU3, 6VYQ, 6VYR, 6VYS, 6VYT, 6VYU, 6VYW, 6VYX, 6VYY, 6VYZ, 6VZ2, 6VZ3, 6VZ5, 6VZ7, 6VZJ, 6X6T, 6X7F, 6X7K, 6X9Q, 6XDQ, 6XDR, 6XGF, 6XII, 6XIJ

  • PubMed Abstract: 

    In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.


  • Organizational Affiliation

    Waksman Institute and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21A [auth 0]103Escherichia coliMutation(s): 0 
Gene Names: rplU
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22B [auth 1]110Escherichia coliMutation(s): 0 
Gene Names: rplV
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Find proteins for P61175 (Escherichia coli (strain K12))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23C [auth 2]100Escherichia coliMutation(s): 0 
Gene Names: rplW
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24D [auth 3]104Escherichia coliMutation(s): 0 
Gene Names: rplX
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25E [auth 4]94Escherichia coliMutation(s): 0 
Gene Names: rplY
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10I [auth 9]165Escherichia coliMutation(s): 0 
Gene Names: rplJ
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaK [auth AA]1,342Escherichia coliMutation(s): 0 
Gene Names: rpoBZ5560ECs4910
EC: 2.7.7.6
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusGL [auth AB]181Escherichia coliMutation(s): 0 
Gene Names: nusG
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaM [auth AC],
N [auth AD]
329Escherichia coliMutation(s): 0 
Gene Names: rpoA
EC: 2.7.7.6
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'O [auth AE]1,407Escherichia coliMutation(s): 1 
Gene Names: rpoCBvCmsKKP036_03580
EC: 2.7.7.6
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaP [auth AF]91Escherichia coliMutation(s): 0 
Gene Names: rpoZZ5075ECs4524
EC: 2.7.7.6
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusAQ [auth AG]495Escherichia coliMutation(s): 0 
Gene Names: nusA
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18S [auth C]75Escherichia coliMutation(s): 0 
Gene Names: rpsR
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20U [auth E]87Escherichia coliMutation(s): 0 
Gene Names: rpsT
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21V [auth F]71Escherichia coliMutation(s): 0 
Gene Names: rpsU
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2W [auth G]241Escherichia coliMutation(s): 0 
Gene Names: rpsB
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S1X [auth H]557Escherichia coliMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3Y [auth I]233Escherichia coliMutation(s): 0 
Gene Names: rpsC
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4Z [auth J]206Escherichia coliMutation(s): 0 
Gene Names: rpsD
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5AA [auth K]167Escherichia coliMutation(s): 0 
Gene Names: rpsE
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6BA [auth L]135Escherichia coliMutation(s): 0 
Gene Names: rpsFb4200JW4158
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7CA [auth M]179Escherichia coliMutation(s): 0 
Gene Names: rpsGGHR40_06850
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8DA [auth N]130Escherichia coliMutation(s): 0 
Gene Names: rpsH
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9EA [auth O]130Escherichia coliMutation(s): 0 
Gene Names: rpsI
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10FA [auth P]103Escherichia coliMutation(s): 0 
Gene Names: rpsJ
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11GA [auth Q]129Escherichia coliMutation(s): 0 
Gene Names: rpsK
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12HA [auth R]124Escherichia coliMutation(s): 0 
Gene Names: rpsL
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14IA [auth S]101Escherichia coliMutation(s): 0 
Gene Names: rpsN
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15JA [auth T]89Escherichia coliMutation(s): 0 
Gene Names: rpsO
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16KA [auth U]82Escherichia coliMutation(s): 0 
Gene Names: rpsP
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17LA [auth V]84Escherichia coliMutation(s): 0 
Gene Names: rpsQ
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19MA [auth W]92Escherichia coliMutation(s): 0 
Gene Names: rpsS
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13NA [auth X]118Escherichia coliMutation(s): 0 
Gene Names: rpsM
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11OA [auth Y]142Escherichia coliMutation(s): 0 
Gene Names: rplK
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L7/L12PA [auth Z]121Escherichia coliMutation(s): 0 
Gene Names: rplL
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27RA [auth b]85Escherichia coliMutation(s): 0 
Gene Names: rpmAb3185JW3152
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28SA [auth c]78Escherichia coliMutation(s): 0 
Gene Names: rpmB
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29UA [auth e]63Escherichia coliMutation(s): 0 
Gene Names: rpmC
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30VA [auth f]59Escherichia coliMutation(s): 0 
Gene Names: rpmD
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31WA [auth g]70Escherichia coliMutation(s): 0 
Gene Names: rpmE
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2XA [auth h]273Escherichia coliMutation(s): 0 
Gene Names: rplBb3317JW3279
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32YA [auth i]57Escherichia coliMutation(s): 0 
Gene Names: rpmF
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3ZA [auth j]209Escherichia coliMutation(s): 0 
Gene Names: rplCb3320JW3282
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33AB [auth k]55Escherichia coliMutation(s): 0 
Gene Names: rpmG
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4BB [auth l]201Escherichia coliMutation(s): 0 
Gene Names: rplD
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34CB [auth m]46Escherichia coliMutation(s): 0 
Gene Names: rpmH
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5DB [auth n]179Escherichia coliMutation(s): 0 
Gene Names: rplE
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35EB [auth o]65Escherichia coliMutation(s): 0 
Gene Names: rpmI
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6FB [auth p]177Escherichia coliMutation(s): 0 
Gene Names: rplF
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36GB [auth q]38Escherichia coliMutation(s): 0 
Gene Names: rpmJ
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9HB [auth r]149Escherichia coliMutation(s): 0 
Gene Names: rplI
UniProt
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13IB [auth s]142Escherichia coliMutation(s): 0 
Gene Names: rplM
UniProt
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14JB [auth t]123Escherichia coliMutation(s): 0 
Gene Names: rplN
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15KB [auth u]144Escherichia coliMutation(s): 0 
Gene Names: rplO
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16LB [auth v]136Escherichia coliMutation(s): 0 
Gene Names: rplPb3313JW3275
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17MB [auth w]127Escherichia coliMutation(s): 0 
Gene Names: rplQECCG_03701
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18NB [auth x]117Escherichia coliMutation(s): 0 
Gene Names: rplR
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19OB [auth y]115Escherichia coliMutation(s): 0 
Gene Names: rplS
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20PB [auth z]118Escherichia coliMutation(s): 0 
Gene Names: rplT
UniProt
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Entity ID: 6
MoleculeChains LengthOrganismImage
NT DNAF [auth 5]36synthetic construct
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Entity ID: 7
MoleculeChains LengthOrganismImage
T DNAG [auth 6]36synthetic construct
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Entity ID: 8
MoleculeChains LengthOrganismImage
mRNA with 24 nt long spacerH [auth 7]41synthetic construct
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Entity ID: 10
MoleculeChains LengthOrganismImage
E-site and P-site tRNA (fMet)J [auth A],
R [auth B]
76Escherichia coli
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Entity ID: 18
MoleculeChains LengthOrganismImage
16S rRNAT [auth D]1,542Escherichia coli
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Entity ID: 41
MoleculeChains LengthOrganismImage
23S rRNAQA [auth a]2,904Escherichia coli
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Entity ID: 44
MoleculeChains LengthOrganismImage
5S rRNATA [auth d]120Escherichia coli
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-02
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references
  • Version 1.2: 2020-09-23
    Changes: Database references
  • Version 1.3: 2024-10-16
    Changes: Data collection, Database references, Structure summary