6WM0 | pdb_00006wm0

TASK2 in MSP1D1 lipid nanodisc at pH 8.5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6WM0

This is version 1.3 of the entry. See complete history

Literature

Structural basis for pH gating of the two-pore domain K + channel TASK2.

Li, B.Rietmeijer, R.A.Brohawn, S.G.

(2020) Nature 586: 457-462

  • DOI: https://doi.org/10.1038/s41586-020-2770-2
  • Primary Citation Related Structures: 
    6WLV, 6WM0

  • PubMed Abstract: 

    TASK2 (also known as KCNK5) channels generate pH-gated leak-type K + currents to control cellular electrical excitability 1-3 . TASK2 is involved in the regulation of breathing by chemosensory neurons of the retrotrapezoid nucleus in the brainstem 4-6 and pH homeostasis by kidney proximal tubule cells 7,8 . These roles depend on channel activation by intracellular and extracellular alkalization 3,8,9 , but the mechanistic basis for TASK2 gating by pH is unknown. Here we present cryo-electron microscopy structures of Mus musculus TASK2 in lipid nanodiscs in open and closed conformations. We identify two gates, distinct from previously observed K + channel gates, controlled by stimuli on either side of the membrane. Intracellular gating involves lysine protonation on inner helices and the formation of a protein seal between the cytoplasm and the channel. Extracellular gating involves arginine protonation on the channel surface and correlated conformational changes that displace the K + -selectivity filter to render it nonconductive. These results explain how internal and external protons control intracellular and selectivity filter gates to modulate TASK2 activity.


  • Organizational Affiliation
    • Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.

Macromolecule Content 

  • Total Structure Weight: 77.52 kDa 
  • Atom Count: 4,105 
  • Modeled Residue Count: 510 
  • Deposited Residue Count: 688 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Potassium channel TASK2
A, B
344Mus musculusMutation(s): 0 
Gene Names: Kcnk5
Membrane Entity: Yes 
UniProt
Find proteins for Q9JK62 (Mus musculus)
Explore Q9JK62 
Go to UniProtKB:  Q9JK62
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JK62
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.1 beta

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesDP2GM123496

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-15
    Type: Initial release
  • Version 1.1: 2020-10-14
    Changes: Database references, Derived calculations
  • Version 1.2: 2020-10-28
    Changes: Database references
  • Version 1.3: 2024-11-06
    Changes: Data collection, Database references, Structure summary