Download MendeleyCrystallographic and kinetic analyses of the FdsBG subcomplex of the cytosolic formate dehydrogenase FdsABG fromCupriavidus necator.
Young, T., Niks, D., Hakopian, S., Tam, T.K., Yu, X., Hille, R., Blaha, G.M.(2020) J Biol Chem 295: 6570-6585
- PubMed: 32249211
- DOI: https://doi.org/10.1074/jbc.RA120.013264
- Primary Citation of Related Structures:
6VW7, 6VW8 - PubMed Abstract:
Formate oxidation to carbon dioxide is a key reaction in one-carbon compound metabolism, and its reverse reaction represents the first step in carbon assimilation in the acetogenic and methanogenic branches of many anaerobic organisms. The molybdenum-containing dehydrogenase FdsABG is a soluble NAD + -dependent formate dehydrogenase and a member of the NADH dehydrogenase superfamily. Here, we present the first structure of the FdsBG subcomplex of the cytosolic FdsABG formate dehydrogenase from the hydrogen-oxidizing bacterium Cupriavidus necator H16 both with and without bound NADH. The structures revealed that the two iron-sulfur clusters, Fe 4 S 4 in FdsB and Fe 2 S 2 in FdsG, are closer to the FMN than they are in other NADH dehydrogenases. Rapid kinetic studies and EPR measurements of rapid freeze-quenched samples of the NADH reduction of FdsBG identified a neutral flavin semiquinone, FMNH • , not previously observed to participate in NADH-mediated reduction of the FdsABG holoenzyme. We found that this semiquinone forms through the transfer of one electron from the fully reduced FMNH - , initially formed via NADH-mediated reduction, to the Fe 2 S 2 cluster. This Fe 2 S 2 cluster is not part of the on-path chain of iron-sulfur clusters connecting the FMN of FdsB with the active-site molybdenum center of FdsA. According to the NADH-bound structure, the nicotinamide ring stacks onto the re -face of the FMN. However, NADH binding significantly reduced the electron density for the isoalloxazine ring of FMN and induced a conformational change in residues of the FMN-binding pocket that display peptide-bond flipping upon NAD + binding in proper NADH dehydrogenases.
Organizational Affiliation:
Department of Biochemistry, University of California, Riverside, California 92521.
