6VNW

Cryo-EM structure of apo-BBSome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes.

Yang, S.Bahl, K.Chou, H.T.Woodsmith, J.Stelzl, U.Walz, T.Nachury, M.V.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.55954
  • Primary Citation of Related Structures:  
    6VNW, 6VOA

  • PubMed Abstract: 

    Dynamic trafficking of G protein-coupled receptors (GPCRs) out of cilia is mediated by the BBSome. In concert with its membrane recruitment factor, the small GTPase ARL6/BBS3, the BBSome ferries GPCRs across the transition zone, a diffusion barrier at the base of cilia. Here, we present the near-atomic structures of the BBSome by itself and in complex with ARL6 GTP , and we describe the changes in BBSome conformation induced by ARL6 GTP binding. Modeling the interactions of the BBSome with membranes and the GPCR Smoothened (SMO) reveals that SMO, and likely also other GPCR cargoes, must release their amphipathic helix 8 from the membrane to be recognized by the BBSome.


  • Organizational Affiliation

    Laboratory of Molecular Electron Microscopy, The Rockefeller University, New York, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 18 proteinA [auth H]69Bos taurusMutation(s): 0 
UniProt
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UniProt GroupG3N2W1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 2 protein homolog721Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 4 protein homologC [auth E]519Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
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UniProt GroupQ1JQ97
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 5 protein homologD [auth G]341Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A6QLF9 (Bos taurus)
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UniProt GroupA6QLF9
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 7 protein homologE [auth C]715Bos taurusMutation(s): 0 
UniProt
Find proteins for F1MB52 (Bos taurus)
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UniProt GroupF1MB52
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat domain 8501Bos taurusMutation(s): 0 
UniProt
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UniProt GroupF1N4X0
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 9G [auth I]887Bos taurusMutation(s): 0 
UniProt
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UniProt GroupE1BHJ5
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
BBS1 domain-containing proteinH [auth D]592Bos taurusMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM089933

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-01
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Data collection, Database references