6VMT

Leishmania major Programmed Cell Death Protein 5 Homolog


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.222 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report

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This is version 1.1 of the entry. See complete history


Literature

Leishmania major Programmed Cell Death Protein 5 Homolog

Merritt, E.A.Anderson, L.Arakaki, T.Hol, W.G.Le Trong, I.Mehlin, C.Soltis, M.Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Programmed Cell Death Protein 5 Homolog117Leishmania majorMutation(s): 0 
Gene Names: LMJF_28_1920
UniProt
Find proteins for Q4Q874 (Leishmania major)
Explore Q4Q874 
Go to UniProtKB:  Q4Q874
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4Q874
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.222 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.386α = 90
b = 115.386β = 90
c = 58.628γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
MoRDaphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-26
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Refinement description