6VLA | pdb_00006vla

Hs05 - Intragenic antimicrobial peptide

PDB DOI: https://doi.org/10.2210/pdb6VLA/pdb
BMRB: 30717

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2020-01-23 Released: 2020-12-02
Deposition Author(s): Santos, M.A., Silva, E.M.C., Brand, G.D., Oliveira, A.L.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6VLA

This is version 1.2 of the entry. See complete history.

Literature

Characterization of novel human Intragenic Antimicrobial Peptides, incorporation and release studies from ureasil-polyether hybrid matrix

Mariano, G.H., Gomes de Sa, L.G., Carmo da Silva, E.M., Santos, M.A., Cardozo Fh, J., Lira, B.O.V., Barbosa, E.A., Araujo, A.R., Leite, J.R.S.A., Ramada, M.H.S., Bloch Jr., C., Oliveira, A.L., Chaker, J.A., Brand, G.D.

(2020) Mater Sci Eng C Mater Biol Appl 119: 111581

DOI: https://doi.org/10.1016/j.msec.2020.111581

Macromolecule Content

Total Structure Weight: 2.07 kDa
Atom Count: 145
Modeled Residue Count: 17
Deposited Residue Count: 17
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Intragenic antimicrobial peptide	A	17	Homo sapiens	Mutation(s): 0 EC: 2.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H0A0 (Homo sapiens) Explore Q9H0A0 Go to UniProtKB: Q9H0A0
PHAROS: Q9H0A0 GTEx: ENSG00000135372
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9H0A0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-12-02

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Brazil	FAP-DF: 0193.001566/2017
Other government	Brazil	FAP-DF: 0193.000866/2015

Revision History (Full details and data files)

Version 1.0: 2020-12-02
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.