6V4J

Structure of TrkH-TrkA in complex with ATP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

TrkA undergoes a tetramer-to-dimer conversion to open TrkH which enables changes in membrane potential.

Zhang, H.Pan, Y.Hu, L.Hudson, M.A.Hofstetter, K.S.Xu, Z.Rong, M.Wang, Z.Prasad, B.V.V.Lockless, S.W.Chiu, W.Zhou, M.

(2020) Nat Commun 11: 547-547

  • DOI: https://doi.org/10.1038/s41467-019-14240-9
  • Primary Citation of Related Structures:  
    6V4J, 6V4K, 6V4L

  • PubMed Abstract: 

    TrkH is a bacterial ion channel implicated in K + uptake and pH regulation. TrkH assembles with its regulatory protein, TrkA, which closes the channel when bound to ADP and opens it when bound to ATP. However, it is unknown how nucleotides control the gating of TrkH through TrkA. Here we report the structures of the TrkH-TrkA complex in the presence of ADP or ATP. TrkA forms a tetrameric ring when bound to ADP and constrains TrkH to a closed conformation. The TrkA ring splits into two TrkA dimers in the presence of ATP and releases the constraints on TrkH, resulting in an open channel conformation. Functional studies show that both the tetramer-to-dimer conversion of TrkA and the loss of constraints on TrkH are required for channel gating. In addition, deletion of TrkA in Escherichia coli depolarizes the cell, suggesting that the TrkH-TrkA complex couples changes in intracellular nucleotides to membrane potential.


  • Organizational Affiliation

    Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Trk system potassium uptake protein TrkH
A, B, C, D
485Vibrio parahaemolyticus RIMD 2210633Mutation(s): 0 
Gene Names: trkHVP0032
Membrane Entity: Yes 
UniProt
Find proteins for Q87TN7 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Explore Q87TN7 
Go to UniProtKB:  Q87TN7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ87TN7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium uptake protein TrkA
E, F, G, H
458Vibrio parahaemolyticus RIMD 2210633Mutation(s): 0 
Gene Names: VP3045
UniProt
Find proteins for Q87KD2 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Explore Q87KD2 
Go to UniProtKB:  Q87KD2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ87KD2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL086392
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK122784

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-12
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Database references, Structure summary