6UCD | pdb_00006ucd

The crystal structure of Staphylococcus aureus super antigen-like protein SSL10

PDB DOI: https://doi.org/10.2210/pdb6UCD/pdb

Classification: TOXIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-09-16 Released: 2020-08-05
Deposition Author(s): Patel, D., Young, P.G., Bunker, R.D., Baker, E.N., Fraser, J.D.
Funding Organization(s): Health Research Council (HRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.281 (Depositor), 0.262 (DCC)
R-Value Work:
0.246 (Depositor), 0.232 (DCC)
R-Value Observed:
0.248 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of Staphylococcus aureus super antigen-like protein SSL10

Patel, D., Hou, W., Langley, R.J., Young, P.G., Ivanovic, I., Bunker, R.D., Baker, E.N., Fraser, J.D.

To be published.

Macromolecule Content

Total Structure Weight: 46.53 kDa
Atom Count: 2,733
Modeled Residue Count: 347
Deposited Residue Count: 398
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Exotoxin	A, B	199	Staphylococcus aureus	Mutation(s): 0 Gene Names: tst, set14_2, BTN44_10650, EP54_13120, ER624_09120, HMPREF3211_02406, M1K003_2331, NCTC10654_00508, NCTC13131_05891, RK64_02640
UniProt
Find proteins for Q2G2X7 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G2X7 Go to UniProtKB: Q2G2X7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2G2X7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.281 (Depositor), 0.262 (DCC)
R-Value Work: 0.246 (Depositor), 0.232 (DCC)
R-Value Observed: 0.248 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.55	α = 90
b = 91.55	β = 90
c = 46.55	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-08-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Health Research Council (HRC)	New Zealand	12/1111

Revision History (Full details and data files)

Version 1.0: 2020-08-05
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.