The structure of penicillin-binding protein 2 from Yersinia pestis in complex with mecillinam
Pankov, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidoglycan D,D-transpeptidase MrdA | A [auth AAA], B [auth BBB] | 583 | Yersinia pestis | Mutation(s): 0  Gene Names: mrdA, YPO2604 EC: 3.4.16.4 | |
UniProt | |||||
Find proteins for A0A0H2W2Y2 (Yersinia pestis) Explore A0A0H2W2Y2  Go to UniProtKB:  A0A0H2W2Y2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H2W2Y2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DH4 Query on DH4 | C [auth AAA], D [auth BBB] | 2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid C15 H25 N3 O3 S GIESTXBEHWEDNC-XRSRENSCSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 48.172 | α = 112.917 |
b = 84.035 | β = 95.306 |
c = 87.099 | γ = 104.566 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |