Crystal Structure of Y55S Serine Hydroxymethyltransferase variant from Streptococcus thermophilus in complex with gem-diamine intermediate of D-serine
Petrillo, G., Hernandez, K., Bujons, J., Clapes, P., Uson, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Serine hydroxymethyltransferase | A, B [auth C] | 416 | Streptococcus thermophilus | Mutation(s): 1  Gene Names: glyA, CDA68_00974, DID82_07515 EC: 2.1.2.1 | ![]() |
UniProt | |||||
Find proteins for Q5M4W1 (Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)) Explore Q5M4W1  Go to UniProtKB:  Q5M4W1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5M4W1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
O3Z (Subject of Investigation/LOI) Query on O3Z | D [auth A], G [auth C] | (2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid C11 H17 N2 O8 P ODVKKQWXKRZJLG-SECBINFHSA-N | |||
GOL (Subject of Investigation/LOI) Query on GOL | C [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | F [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 114.782 | α = 90 |
b = 114.782 | β = 90 |
c = 192.833 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
SCALEPACK | data scaling |
PDB_EXTRACT | data extraction |
XPREP | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Spanish Ministry of Economy and Competitiveness | Spain | -- |