6SL4 | pdb_00006sl4

The unique CBM-Cthe_0271 of Ruminiclostridium thermocellum

PDB DOI: https://doi.org/10.2210/pdb6SL4/pdb

Classification: CELL ADHESION
Organism(s): Acetivibrio thermocellus ATCC 27405
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-08-18 Released: 2020-03-18
Deposition Author(s): Milana, M.V., Almog, R., Yaniv, O., Oded, L., Inna, R.G., Felix, F., Edward, A.B., Raphael, L.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.252 (Depositor), 0.252 (DCC)
R-Value Work:
0.208 (Depositor), 0.215 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

The unique CBM-Cthe_0271 of Ruminiclostridium thermocellum

Milana, M.V., Almog, R., Yaniv, O., Oded, L., Inna, R.G., Felix, F., Edward, A.B., Raphael, L.

To be published.

Macromolecule Content

Total Structure Weight: 52.28 kDa
Atom Count: 3,895
Modeled Residue Count: 449
Deposited Residue Count: 450
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type 3a cellulose-binding domain protein	A, B, C	150	Acetivibrio thermocellus ATCC 27405	Mutation(s): 0 Gene Names: Cthe_0271
UniProt
Find proteins for A3DC31 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)) Explore A3DC31 Go to UniProtKB: A3DC31
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A3DC31
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth B] SDF format, chain F [auth B] SDF format, chain G [auth C] SDF format, chain H [auth C] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth C] mmCIF format, chain D [auth A] mmCIF format, chain E [auth B] mmCIF format, chain F [auth B] mmCIF format, chain G [auth C] mmCIF format, chain H [auth C]	D [auth A], E [auth B], F [auth B], G [auth C], H [auth C]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth C] Interactions & Density Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.252 (Depositor), 0.252 (DCC)
R-Value Work: 0.208 (Depositor), 0.215 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.99	α = 90
b = 77.99	β = 90
c = 288.83	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-03-18

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	24/11

Revision History (Full details and data files)

Version 1.0: 2020-03-18
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references, Derived calculations

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