6S2D | pdb_00006s2d

Winter flounder 1 in SDS micelles

PDB DOI: https://doi.org/10.2210/pdb6S2D/pdb
BMRB: 34416

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Pseudopleuronectes americanus
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2019-06-20 Released: 2020-07-15
Deposition Author(s): Clarke, M., Mason, A.J.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 100
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6S2D

This is version 2.1 of the entry. See complete history.

Literature

Winter flounder 1 in SDS micelles

Clarke, M., Mason, A.J.

To be published.

Macromolecule Content

Total Structure Weight: 2.49 kDa
Atom Count: 175
Modeled Residue Count: 24
Deposited Residue Count: 24
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pleurocidin-like prepropolypeptide	A	24	Pseudopleuronectes americanus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for Q90VX5 (Pseudopleuronectes americanus) Explore Q90VX5 Go to UniProtKB: Q90VX5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q90VX5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 100
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 2.0: 2023-06-14
Type: Coordinate replacement
Reason: Sequence discrepancy
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Non-polymer description, Other, Polymer sequence, Source and taxonomy, Structure summary
Version 2.1: 2024-06-19
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.