6RUD | pdb_00006rud

WOLINELLA SUCCINOGENES L-ASPARAGINASE P1

PDB DOI: https://doi.org/10.2210/pdb6RUD/pdb

Classification: HYDROLASE
Organism(s): Wolinella succinogenes
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-05-28 Released: 2020-07-15
Deposition Author(s): Timofeev, V.I., Kuranova, I.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.194 (Depositor), 0.204 (DCC)
R-Value Work:
0.160 (Depositor), 0.171 (DCC)
R-Value Observed:
0.162 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids

Timofeev, V.I., Zhukhlistova, N.E., Kuranova, I.P.

(2020) Russ J Bioorg Chem 46

DOI: https://doi.org/10.1134/S1068162020020168

Macromolecule Content

Total Structure Weight: 138.81 kDa
Atom Count: 10,438
Modeled Residue Count: 1,275
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-asparaginase	A, B, C, D	328	Wolinella succinogenes	Mutation(s): 0 Gene Names: ansA, ansB, WS0660 EC: 3.5.1.1
UniProt
Find proteins for P50286 (Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)) Explore P50286 Go to UniProtKB: P50286
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P50286
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.194 (Depositor), 0.204 (DCC)
R-Value Work: 0.160 (Depositor), 0.171 (DCC)
R-Value Observed: 0.162 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.82	α = 90
b = 109.17	β = 95.5
c = 87.7	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 1.1: 2021-03-17
Changes: Database references
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.