Download MendeleyEndothiapepsin in complex with compound 046
Magari, F., Heine, A., Konstantinidou, M., Sutanto, F., Haupenthal, J., Jumde, R.V., Unver, M.Y., Camacho, C.J., Hirsch, A.K.H., Doemling, A., Klebe, G.To be published.
6RON
Endothiapepsin in complex with compound 046
- PDB DOI: https://doi.org/10.2210/pdb6RON/pdb
- Classification: HYDROLASE
- Organism(s): Cryphonectria parasitica
- Mutation(s): No
- Deposited: 2019-05-13 Released: 2020-07-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.153
- R-Value Work: 0.134
- R-Value Observed: 0.135
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endothiapepsin | 330 | Cryphonectria parasitica | Mutation(s): 0 EC: 3.4.23.22 |  | |
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838 Go to UniProtKB: P11838 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| KCE (Subject of Investigation/LOI) Query on KCE | B [auth A] | [(1~{S},2~{R})-1-[1-(1,3-benzodioxol-5-ylmethyl)-1,2,3,4-tetrazol-5-yl]-3-(4-~{tert}-butylphenyl)-2-methyl-propyl]diazane C23 H30 N6 O2 BBOIZOIQFPNBML-VFNWGFHPSA-N |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | D [auth A], E [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.153
- R-Value Work: 0.134
- R-Value Observed: 0.135
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.764 | α = 90 |
| b = 73.352 | β = 109.65 |
| c = 53.175 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MxCuBE | data collection |
| XDS | data scaling |
| PHASER | phasing |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2020-07-08 Deposition Author(s): Magari, F., Heine, A., Klebe, G.
Revision History (Full details and data files)
- Version 1.0: 2020-07-08
Type: Initial release - Version 1.1: 2024-11-13
Changes: Data collection, Database references, Structure summary
