6RHD | pdb_00006rhd

Crystal structure of the amyloid-like TSYVGV segment from the Candida albicans Agglutinin-like protein (Adhesin) 5

PDB DOI: https://doi.org/10.2210/pdb6RHD/pdb

Classification: PROTEIN FIBRIL
Organism(s): Candida albicans
Mutation(s): No

Deposited: 2019-04-19 Released: 2020-03-25
Deposition Author(s): Landau, M., Perov, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free:
0.127 (Depositor), 0.125 (DCC)
R-Value Work:
0.106 (Depositor), 0.105 (DCC)
R-Value Observed:
0.108 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Amyloid structures from a Candida albicans adhesin Structure and conservation of amyloid spines from fungal adhesins

Perov, S., Landau, M., Lipke, P.N.

To be published.

Macromolecule Content

Total Structure Weight: 0.62 kDa
Atom Count: 51
Modeled Residue Count: 6
Deposited Residue Count: 6
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Agglutinin-like protein 5	A [auth B]	6	Candida albicans	Mutation(s): 0
UniProt
Find proteins for O13368 (Candida albicans) Explore O13368 Go to UniProtKB: O13368
Entity Groups
UniProt Group	O13368
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.127 (Depositor), 0.125 (DCC)
R-Value Work: 0.106 (Depositor), 0.105 (DCC)
R-Value Observed: 0.108 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 11.77	α = 90
b = 9.36	β = 95.08
c = 16.79	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-03-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-03-25
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.