6R14 | pdb_00006r14

Structure of kiteplatinated dsDNA

PDB DOI: https://doi.org/10.2210/pdb6R14/pdb
NAKB: 6R14
BMRB: 34378

Classification: DNA
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2019-03-13 Released: 2020-04-01
Deposition Author(s): Margiotta, N., Papadia, P., Kubicek, K., Krejcikova, M., Gkionis, K., Sponer, J.
Funding Organization(s): Ministry of Education (Czech Republic)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6R14

This is version 1.1 of the entry. See complete history.

Literature

Structural characterization of kiteplatinated DNA

Krejcikova, M., Papadia, P., Gkionis, K., Plats, J., Petruzzella, E., Savino, S., Hoeschelle, J.D., Natile, G., Sponer, J., Kubicek, K., Margiotta, N.

To be published.

Macromolecule Content

Total Structure Weight: 7.71 kDa
Atom Count: 495
Modeled Residue Count: 24
Deposited Residue Count: 24
Unique nucleic acid chains: 2

Macromolecules

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 1
Kiteplatinated DNA oligomer, chain A	A	12	Homo sapiens
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
Kiteplatinated DNA oligomer, chain B	B	12	Homo sapiens
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LN8 (Subject of Investigation/LOI) Query on LN8 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	Kiteplatin C₆ H₁₄ Cl₂ N₂ Pt CPGREGRXVKABHL-UOXVPMNTSA-L		Interactions Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-04-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Education (Czech Republic)	Czech Republic	LQ1601

Revision History (Full details and data files)

Version 1.0: 2020-04-01
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.