6QBZ | pdb_00006qbz

Solution structure of the N-terminal domain of the Staphylococcus aureus Hibernation Promoting Factor


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Solution structure of the N-terminal domain of the Staphylococcus aureus hibernation promoting factor.

Usachev, K.S.Validov, S.Z.Khusainov, I.S.Varfolomeev, A.A.Klochkov, V.V.Aganov, A.V.Yusupov, M.M.

(2019) J Biomol NMR 73: 223-227

  • DOI: https://doi.org/10.1007/s10858-019-00254-4
  • Primary Citation Related Structures: 
    6QBZ

  • PubMed Abstract: 

    Staphylococcus aureus hibernation promoting factor (SaHPF) is a 22,2 kDa protein which plays a crucial role in 100S Staphylococcus aureus ribosome formation during stress. SaHPF consists of N-terminal domain (NTD) that prevents proteins synthesis by binding to the 30S subunit at the P- and A-sites, connected through a flexible linker with a C-terminal domain (CTD) that keeps ribosomes in 100S form via homodimerization. Recently obtained 100S ribosome structure of S. aureus by cryo-EM shown that SaHPF-NTD bound to the ribosome active sites, however due to the absence of SaHPF-NTD structure it was modeled by homology with the E. coli hibernation factors HPF and YfiA. In present paper we have determined the solution structure of SaHPF-NTD by high-resolution NMR spectroscopy which allows us to increase structural knowledge about HPF structure from S. aureus.


  • Organizational Affiliation
    • Laboratory of Structural Biology, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya, Kazan, 420008, Russian Federation.

Macromolecule Content 

  • Total Structure Weight: 12.93 kDa 
  • Atom Count: 910 
  • Modeled Residue Count: 110 
  • Deposited Residue Count: 110 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Ribosome hibernation promoting factor110Staphylococcus aureusMutation(s): 0 
Gene Names: 
UniProt
Find proteins for Q2G055 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G055 
Go to UniProtKB:  Q2G055
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2G055
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation16-14-10014

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-19
    Type: Initial release
  • Version 1.1: 2019-06-26
    Changes: Data collection, Database references
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references