Atomic resolution crystal structure of an AAB collagen heterotrimer
Jalan, A.A., Hartgerink, J.D., Brear, P., Leitinger, B., Farndale, R.W.(2019) Nat Chem Biol 
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
(2019) Nat Chem Biol 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Leading Chain of the AAB Collagen Heterotrimer | 49 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Middle Chain of the AAB Collagen Heterotrimer | 50 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Trailing Chain of the AAB Collagen Heterotrimer | 49 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
HYP Query on HYP | A | L-PEPTIDE LINKING | C5 H9 N O3 | PRO | |
NLE Query on NLE | A | L-PEPTIDE LINKING | C6 H13 N O2 | LEU |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 19.736 | α = 86.361 |
b = 28.076 | β = 86.681 |
c = 48.384 | γ = 77.21 |
Software Name | Purpose |
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PHENIX | refinement |
REFMAC | refinement |
Aimless | data scaling |
PHASER | phasing |
XDS | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
Royal Society | United Kingdom | NF140721 |