6Q1S | pdb_00006q1s

A hypothetical aminotransferase from Mycobacterium tuberculosis, alpha-ketoglutarate and PMP bound form

PDB DOI: https://doi.org/10.2210/pdb6Q1S/pdb

Classification: TRANSFERASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-08-05 Released: 2020-09-23
Deposition Author(s): Duan, L., Sacchettini, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.227 (Depositor), 0.216 (DCC)
R-Value Work:
0.205 (Depositor), 0.197 (DCC)
R-Value Observed:
0.215 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

A hypothetical aminotransferase from Mycobacterium tuberculosis

Duan, L., Sacchettini, J.

To be published.

Macromolecule Content

Total Structure Weight: 127.33 kDa
Atom Count: 9,014
Modeled Residue Count: 1,133
Deposited Residue Count: 1,164
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable amino acid aminotransferase	A, B, C, D	291	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: Rv0812 EC: 4.1.3.38 (UniProt), 2.6.1.21 (UniProt)
UniProt
Find proteins for Q79FW0 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore Q79FW0 Go to UniProtKB: Q79FW0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q79FW0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PMP (Subject of Investigation/LOI) Query on PMP Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain I [auth C] SDF format, chain M [auth D] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain I [auth C] MOL2 format, chain M [auth D] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B] mmCIF format, chain I [auth C] mmCIF format, chain M [auth D]	E [auth A], G [auth B], I [auth C], M [auth D]	4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C₈ H₁₃ N₂ O₅ P ZMJGSOSNSPKHNH-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain M [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain M [auth D]
CIT Query on CIT Download:Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain L [auth C] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] mmCIF format, chain K [auth C] mmCIF format, chain L [auth C]	K [auth C], L [auth C]	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Interactions Focus chain K [auth C] Focus chain L [auth C] Interactions & Density Focus chain K [auth C] Focus chain L [auth C]
AKG (Subject of Investigation/LOI) Query on AKG Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth B] SDF format, chain J [auth C] SDF format, chain N [auth D] MOL2 format, chain F [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain N [auth D] mmCIF format, chain F [auth A] mmCIF format, chain H [auth B] mmCIF format, chain J [auth C] mmCIF format, chain N [auth D]	F [auth A], H [auth B], J [auth C], N [auth D]	2-OXOGLUTARIC ACID C₅ H₆ O₅ KPGXRSRHYNQIFN-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain N [auth D] Interactions & Density Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain N [auth D]