Targeting conformational entropy to modulate binding affinity
Caro, J.A., Djanto, V., Wand, A.J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribonuclease | A, B [auth C] | 128 | Bacillus amyloliquefaciens | Mutation(s): 2  EC: 3.1.27 | |
UniProt | |||||
Find proteins for P00648 (Bacillus amyloliquefaciens) Explore P00648  Go to UniProtKB:  P00648 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00648 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Barstar | C [auth B], D | 90 | Bacillus amyloliquefaciens | Mutation(s): 4  | |
UniProt | |||||
Find proteins for P11540 (Bacillus amyloliquefaciens) Explore P11540  Go to UniProtKB:  P11540 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11540 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | E [auth A], J [auth B], K [auth D], L [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
EDO Query on EDO | F [auth A], G [auth A], H [auth C], I [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 36.704 | α = 90 |
b = 68.404 | β = 90 |
c = 166.723 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM102447 |