Odorant-binding site in visual opsin
Morizumi, T., Kuroi, K., Eger, B.T., Ou, W.L., Van Eps, N., Tsukamoto, H., Furutani, Y., Ernst, O.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rhodopsin | 348 | Bos taurus | Mutation(s): 0  Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for P02699 (Bos taurus) Explore P02699  Go to UniProtKB:  P02699 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02699 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
G alpha CT2 peptide | 11 | Bos taurus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P04696 (Bos taurus) Explore P04696  Go to UniProtKB:  P04696 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04696 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G31886NL GlyCosmos:  G31886NL GlyGen:  G31886NL |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BOG Query on BOG | D [auth A] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N | |||
PLM Query on PLM | E [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N | |||
64Z (Subject of Investigation/LOI) Query on 64Z | F [auth A] | Geraniol C10 H18 O GLZPCOQZEFWAFX-JXMROGBWSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 243.919 | α = 90 |
b = 243.919 | β = 90 |
c = 109.732 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
autoPROC | data scaling |
PHASER | phasing |
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Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | Canada Research Excellence Chair |