6OJO

Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with pterine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with pterine

Bourne, C.R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
7,8-dihydroneopterin aldolase
A, B, C, D
143Yersinia pestisMutation(s): 0 
Gene Names: y3531
EC: 4.1.2.25
UniProt
Find proteins for A0A5P8YJX5 (Yersinia pestis)
Explore A0A5P8YJX5 
Go to UniProtKB:  A0A5P8YJX5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P8YJX5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.086α = 90
b = 81.489β = 90
c = 96.624γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2020-04-15 
  • Deposition Author(s): Bourne, C.R.

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States1359457

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-15
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Refinement description