6NP7 | pdb_00006np7

Crystal structure of Trypanosoma cruzi bromodomain BDF2 (TcCLB.506553.20)

• PDB DOI: https://doi.org/10.2210/pdb6NP7/pdb

• Classification: TRANSCRIPTION
• Organism(s): Trypanosoma cruzi
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-01-17 Released: 2019-02-13 
• Deposition Author(s): Lin, Y.H., Dong, A., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Hui, R., Harding, R.J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.16 Å
• R-Value Free: 
  0.267 (Depositor), 0.267 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.213 (DCC) 
• R-Value Observed: 
  0.205 (Depositor) 

Literature

Crystal structure of Trypanosoma cruzi bromodomain BDF2 (TcCLB.506553.20)

Lin, Y.H., Dong, A., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Hui, R., Harding, R.J., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 27.24 kDa 
• Atom Count: 1,822 
• Modeled Residue Count: 226 
• Deposited Residue Count: 242 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bromodomain factor 2 protein	A, B	121	Trypanosoma cruzi	Mutation(s): 0  Gene Names: C4B63_57g96
UniProt
Find proteins for A0A2V2V5V1 (Trypanosoma cruzi) Explore A0A2V2V5V1  Go to UniProtKB:  A0A2V2V5V1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.16 Å
• R-Value Free:  0.267 (Depositor), 0.267 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.213 (DCC) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.317	α = 90
b = 66.085	β = 110.89
c = 60.58	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-02-13 
Deposition Author(s): Lin, Y.H., Dong, A., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Vedadi, M., Hui, R., Harding, R.J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2019-02-13
  Type: Initial release
  
• Version 1.1: 2024-03-13
  Changes: Data collection, Database references