6NMI

Cryo-EM structure of the human TFIIH core complex

  • Classification: TRANSCRIPTION
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2019-01-10 Released: 2019-03-13 
  • Deposition Author(s): Greber, B.J., Toso, D., Fang, J., Nogales, E.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Swiss National Science Foundation

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The complete structure of the human TFIIH core complex.

Greber, B.J.Toso, D.B.Fang, J.Nogales, E.

(2019) Elife 8

  • DOI: https://doi.org/10.7554/eLife.44771
  • Primary Citation of Related Structures:  
    6NMI

  • PubMed Abstract: 

    Transcription factor IIH (TFIIH) is a heterodecameric protein complex critical for transcription initiation by RNA polymerase II and nucleotide excision DNA repair. The TFIIH core complex is sufficient for its repair functions and harbors the XPB and XPD DNA-dependent ATPase/helicase subunits, which are affected by human disease mutations. Transcription initiation additionally requires the CdK activating kinase subcomplex. Previous structural work has provided only partial insight into the architecture of TFIIH and its interactions within transcription pre-initiation complexes. Here, we present the complete structure of the human TFIIH core complex, determined by phase-plate cryo-electron microscopy at 3.7 Å resolution. The structure uncovers the molecular basis of TFIIH assembly, revealing how the recruitment of XPB by p52 depends on a pseudo-symmetric dimer of homologous domains in these two proteins. The structure also suggests a function for p62 in the regulation of XPD, and allows the mapping of previously unresolved human disease mutations.


  • Organizational Affiliation

    California Institute for Quantitative Biosciences, University of California, Berkeley, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription and DNA repair factor IIH helicase subunit XPB653Homo sapiensMutation(s): 0 
EC: 3.6.4.12 (PDB Primary Data), 5.6.2.4 (UniProt)
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Find proteins for P19447 (Homo sapiens)
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PHAROS:  P19447
GTEx:  ENSG00000163161 
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UniProt GroupP19447
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription and DNA repair factor IIH helicase subunit XPD760Homo sapiensMutation(s): 0 
EC: 5.6.2.3
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Find proteins for P18074 (Homo sapiens)
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PHAROS:  P18074
GTEx:  ENSG00000104884 
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UniProt GroupP18074
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription factor IIH subunit 1, p62548Homo sapiensMutation(s): 0 
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Find proteins for P32780 (Homo sapiens)
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PHAROS:  P32780
GTEx:  ENSG00000110768 
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UniProt GroupP32780
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription factor IIH subunit 4, p52462Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q92759 (Homo sapiens)
Explore Q92759 
Go to UniProtKB:  Q92759
PHAROS:  Q92759
GTEx:  ENSG00000213780 
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UniProt GroupQ92759
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription factor IIH subunit 2, p44366Homo sapiensMutation(s): 0 
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Find proteins for Q13888 (Homo sapiens)
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GTEx:  ENSG00000145736 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription factor IIH subunit 3, p34308Homo sapiensMutation(s): 0 
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Find proteins for Q13889 (Homo sapiens)
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PHAROS:  Q13889
GTEx:  ENSG00000111358 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
General transcription factor IIH subunit 5, p871Homo sapiensMutation(s): 0 
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Find proteins for Q6ZYL4 (Homo sapiens)
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PHAROS:  Q6ZYL4
GTEx:  ENSG00000272047 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
CDK-activating kinase assembly factor MAT1309Homo sapiensMutation(s): 0 
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Find proteins for P51948 (Homo sapiens)
Explore P51948 
Go to UniProtKB:  P51948
PHAROS:  P51948
GTEx:  ENSG00000020426 
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UniProt GroupP51948
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM63072
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP01-GM063210
Swiss National Science FoundationSwitzerlandP300PA_160983
Swiss National Science FoundationSwitzerlandP300PA_174355

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-13
    Type: Initial release
  • Version 1.1: 2019-03-27
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-18
    Changes: Author supporting evidence, Other
  • Version 1.3: 2024-11-06
    Changes: Data collection, Database references, Refinement description, Structure summary