6NEY | pdb_00006ney

Crystal structure of TcBDF5, a bromodomain containing protein from Trypanosoma cruzi

PDB DOI: https://doi.org/10.2210/pdb6NEY/pdb

Classification: TRANSCRIPTION
Organism(s): Trypanosoma cruzi
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-12-18 Released: 2019-03-20
Deposition Author(s): Loppnau, P., Dong, A., Tempel, W., Lin, Y.H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free:
0.267 (Depositor), 0.274 (DCC)
R-Value Work:
0.224 (Depositor), 0.231 (DCC)
R-Value Observed:
0.226 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of TcBDF5, a bromodomain containing protein from Trypanosoma cruzi

Loppnau, P., Dong, A., Tempel, W., Lin, Y.H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J.

To be published.

Macromolecule Content

Total Structure Weight: 15.05 kDa
Atom Count: 985
Modeled Residue Count: 125
Deposited Residue Count: 131
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	131	Trypanosoma cruzi	Mutation(s): 0 Gene Names: C4B63_1g51
UniProt
Find proteins for A0A2V2W6E9 (Trypanosoma cruzi) Explore A0A2V2W6E9 Go to UniProtKB: A0A2V2W6E9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2V2W6E9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.267 (Depositor), 0.274 (DCC)
R-Value Work: 0.224 (Depositor), 0.231 (DCC)
R-Value Observed: 0.226 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.887	α = 90
b = 70.428	β = 90
c = 26.644	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-03-20

Deposition Author(s):

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2019-03-20
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description