6MHQ | pdb_00006mhq

Structure of connexin-46 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6MHQ

This is version 1.4 of the entry. See complete history

Literature

Structure of native lens connexin 46/50 intercellular channels by cryo-EM.

Myers, J.B.Haddad, B.G.O'Neill, S.E.Chorev, D.S.Yoshioka, C.C.Robinson, C.V.Zuckerman, D.M.Reichow, S.L.

(2018) Nature 564: 372-377

  • DOI: https://doi.org/10.1038/s41586-018-0786-7
  • Primary Citation Related Structures: 
    6MHQ, 6MHY

  • PubMed Abstract: 

    Gap junctions establish direct pathways for cell-to-cell communication through the assembly of twelve connexin subunits that form intercellular channels connecting neighbouring cells. Co-assembly of different connexin isoforms produces channels with unique properties and enables communication across cell types. Here we used single-particle cryo-electron microscopy to investigate the structural basis of connexin co-assembly in native lens gap junction channels composed of connexin 46 and connexin 50 (Cx46/50). We provide the first comparative analysis to connexin 26 (Cx26), which-together with computational studies-elucidates key energetic features governing gap junction permselectivity. Cx46/50 adopts an open-state conformation that is distinct from the Cx26 crystal structure, yet it appears to be stabilized by a conserved set of hydrophobic anchoring residues. 'Hot spots' of genetic mutations linked to hereditary cataract formation map to the core structural-functional elements identified in Cx46/50, suggesting explanations for many of the disease-causing effects.


  • Organizational Affiliation
    • Department of Chemistry, Portland State University, Portland, OR, USA.

Macromolecule Content 

  • Total Structure Weight: 455.62 kDa 
  • Atom Count: 17,376 
  • Modeled Residue Count: 2,124 
  • Deposited Residue Count: 4,176 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gap junction alpha-3 protein, connexin-46
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
348Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9TU17 (Ovis aries)
Explore Q9TU17 
Go to UniProtKB:  Q9TU17
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9TU17
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2
MODEL REFINEMENTPHENIX1.13

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35-GM124779

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2018-12-26
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2019-01-02
    Changes: Data collection, Database references
  • Version 1.3: 2019-12-18
    Changes: Author supporting evidence, Other
  • Version 1.4: 2024-11-20
    Changes: Data collection, Database references, Refinement description, Structure summary