6MG8 | pdb_00006mg8

Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6MG8

This is version 2.2 of the entry. See complete history

Literature

Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched.

Zhang, Y.Bulkley, D.P.Xin, Y.Roberts, K.J.Asarnow, D.E.Sharma, A.Myers, B.R.Cho, W.Cheng, Y.Beachy, P.A.

(2018) Cell 175: 1352-1364.e14

  • DOI: https://doi.org/10.1016/j.cell.2018.10.026
  • Primary Citation Related Structures: 
    6MG8

  • PubMed Abstract: 

    Hedgehog protein signals mediate tissue patterning and maintenance by binding to and inactivating their common receptor Patched, a 12-transmembrane protein that otherwise would suppress the activity of the 7-transmembrane protein Smoothened. Loss of Patched function, the most common cause of basal cell carcinoma, permits unregulated activation of Smoothened and of the Hedgehog pathway. A cryo-EM structure of the Patched protein reveals striking transmembrane domain similarities to prokaryotic RND transporters. A central hydrophobic conduit with cholesterol-like contents courses through the extracellular domain and resembles that used by other RND proteins to transport substrates, suggesting Patched activity in cholesterol transport. Cholesterol activity in the inner leaflet of the plasma membrane is reduced by PTCH1 expression but rapidly restored by Hedgehog stimulation, suggesting that PTCH1 regulates Smoothened by controlling cholesterol availability.


  • Organizational Affiliation
    • Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94158, USA.

Macromolecule Content 

  • Total Structure Weight: 146.9 kDa 
  • Atom Count: 7,034 
  • Modeled Residue Count: 985 
  • Deposited Residue Count: 1,305 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein patched homolog 11,305Mus musculusMutation(s): 0 
Gene Names: Ptch1Ptch
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q61115 (Mus musculus)
Explore Q61115 
Go to UniProtKB:  Q61115
IMPC:  MGI:105373
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ61115
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesR01GM102498
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesR01GM098672
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesS10OD020054
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesS10OD021741
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesR35GM122530

Revision History  (Full details and data files)

  • Version 1.0: 2018-11-28
    Type: Initial release
  • Version 2.0: 2021-06-09
    Type: Coordinate replacement
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Refinement description, Source and taxonomy, Structure summary
  • Version 2.1: 2022-03-16
    Changes: Author supporting evidence, Database references
  • Version 2.2: 2024-11-06
    Changes: Data collection, Structure summary