6M7D | pdb_00006m7d

Structure of ncleoprotein of sendai virus

PDB DOI: https://doi.org/10.2210/pdb6M7D/pdb
NAKB: 6M7D
EM Map EMD-30129: EMDB EMDataResource

Classification: NUCLEAR PROTEIN/RNA
Organism(s): Sendai virus (strain Ohita), synthetic construct
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-03-18 Released: 2021-03-24
Deposition Author(s): Shen, Q., Shan, H., Zhang, N.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 6M7D

This is version 1.2 of the entry. See complete history.

Literature

structure of the nucleocapsid of sendai virus at 2.9 Angstroms resolution

Shen, Q., Shan, H., Zhang, N.

To be published.

Macromolecule Content

Total Structure Weight: 58.99 kDa
Atom Count: 3,280
Modeled Residue Count: 418
Deposited Residue Count: 530
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoprotein	A	524	Sendai virus (strain Ohita)	Mutation(s): 0 Gene Names: N, NP
UniProt
Find proteins for O57286 (Sendai virus (strain Ohita)) Explore O57286 Go to UniProtKB: O57286
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O57286
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
RNA (5'-R(PUPUPUPUPUPU)-3')	B	6	synthetic construct
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-03-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31870743

Revision History (Full details and data files)

Version 1.0: 2021-03-24
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references
Version 1.2: 2025-07-02
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.