6LVT | pdb_00006lvt

Solution structure of holo acyl carrier protein from Thermotoga maritima


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation 3D Report Full Report

Validation slider image for 6LVT

This is version 1.2 of the entry. See complete history

Literature

Structural Characterization of an ACP from Thermotoga maritima : Insights into Hyperthermal Adaptation.

Lee, Y.Jang, A.Jeong, M.C.Park, N.Park, J.Lee, W.C.Cheong, C.Kim, Y.

(2020) Int J Mol Sci 21

  • DOI: https://doi.org/10.3390/ijms21072600
  • Primary Citation Related Structures: 
    6LVT, 6LVU

  • PubMed Abstract: 

    Thermotoga maritima , a deep-branching hyperthermophilic bacterium, expresses an extraordinarily stable Thermotoga maritima acyl carrier protein ( Tm -ACP) that functions as a carrier in the fatty acid synthesis system at near-boiling aqueous environments. Here, to understand the hyperthermal adaptation of Tm -ACP, we investigated the structure and dynamics of Tm -ACP by nuclear magnetic resonance (NMR) spectroscopy. The melting temperature of Tm -ACP (101.4 °C) far exceeds that of other ACPs, owing to extensive ionic interactions and tight hydrophobic packing. The D59 residue, which replaces Pro/Ser of other ACPs, mediates ionic clustering between helices III and IV. This creates a wide pocket entrance to facilitate the accommodation of long acyl chains required for hyperthermal adaptation of the T. maritima cell membrane. Tm -ACP is revealed to be the first ACP that harbor an amide proton hyperprotected against hydrogen/deuterium exchange for I15. The hydrophobic interactions mediated by I15 appear to be the key driving forces of the global folding process of Tm -ACP. Our findings provide insights into the structural basis of the hyperthermal adaptation of ACP, which might have allowed T. maritima to survive in hot ancient oceans.


  • Organizational Affiliation
    • Department of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Korea.

Macromolecule Content 

  • Total Structure Weight: 8.91 kDa 
  • Atom Count: 623 
  • Modeled Residue Count: 81 
  • Deposited Residue Count: 81 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Acyl carrier protein81Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: acpP
UniProt
Find proteins for Q9WZD0 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WZD0 
Go to UniProtKB:  Q9WZD0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WZD0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfS201903S00006

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-09
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references