6LRQ | pdb_00006lrq

Cryo-EM structure of A53T alpha-synuclein amyloid fibril

• PDB DOI: https://doi.org/10.2210/pdb6LRQ/pdb
• EM Map EMD-0958: EMDB EMDataResource

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-01-16 Released: 2020-04-08 
• Deposition Author(s): Sun, Y.P., Zhao, K., Liu, C.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.49 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

Cryo-EM structure of full-length alpha-synuclein amyloid fibril with Parkinson's disease familial A53T mutation.

Sun, Y., Hou, S., Zhao, K., Long, H., Liu, Z., Gao, J., Zhang, Y., Su, X.D., Li, D., Liu, C.

(2020) Cell Res 30: 360-362

• PubMed: 32203130 
• DOI: https://doi.org/10.1038/s41422-020-0299-4
• Primary Citation Related Structures: 
  6LRQ

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Organizational Affiliation: 
• Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 201210, China.
University of Chinese Academy of Sciences, Beijing, 100049, China.
State Key Laboratory of Protein and Plant Gene Research, and Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, 100871, China.
Bio-X-Renji Hospital Research Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200240, China. [e-mail].
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, 200030, China. [e-mail].
Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 201210, China. [e-mail].
University of Chinese Academy of Sciences, Beijing, 100049, China. [e-mail].

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: microscopy

Macromolecule Content 

• Total Structure Weight: 87.04 kDa 
• Atom Count: 2,628 
• Modeled Residue Count: 378 
• Deposited Residue Count: 840 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A, B, C, D, E, F	140	Homo sapiens	Mutation(s): 1  Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840  Go to UniProtKB:  P37840
PHAROS:  P37840 GTEx:  ENSG00000145335

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.49 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-04-08 
Deposition Author(s): Sun, Y.P., Zhao, K., Liu, C.

Revision History  

• Version 1.0: 2020-04-08
  Type: Initial release
  
• Version 1.1: 2020-04-15
  Changes: Database references
• Version 1.2: 2024-03-27
  Changes: Data collection, Database references