6LNK | pdb_00006lnk

Candida albicans Fructose-1,6-bisphosphate aldolase

PDB DOI: https://doi.org/10.2210/pdb6LNK/pdb

Classification: LYASE
Organism(s): Candida albicans SC5314
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-12-30 Released: 2020-12-30
Deposition Author(s): Huang, Y., Cao, H., Ren, Y., Wan, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free:
0.259 (Depositor), 0.255 (DCC)
R-Value Work:
0.198 (Depositor), 0.206 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6LNK

This is version 1.2 of the entry. See complete history.

Literature

Structure-Guided Discovery of the Novel Covalent Allosteric Site and Covalent Inhibitors of Fructose-1,6-Bisphosphate Aldolase to Overcome the Azole Resistance of Candidiasis.

Wen, W., Cao, H., Huang, Y., Tu, J., Wan, C., Wan, J., Han, X., Chen, H., Liu, J., Rao, L., Su, C., Peng, C., Sheng, C., Ren, Y.

(2022) J Med Chem 65: 2656-2674

DOI: https://doi.org/10.1021/acs.jmedchem.1c02102

Macromolecule Content

Total Structure Weight: 80.44 kDa
Atom Count: 5,240
Modeled Residue Count: 673
Deposited Residue Count: 730
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase	A, B	365	Candida albicans SC5314	Mutation(s): 0 Gene Names: FBA1, CAALFM_C401750CA, CaO19.12088, CaO19.4618 EC: 4.1.2.13
UniProt
Find proteins for Q9URB4 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q9URB4 Go to UniProtKB: Q9URB4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9URB4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain C [auth A] MOL2 format, chain E [auth B] MOL2 format, chain C [auth A] mmCIF format, chain E [auth B] mmCIF format, chain C [auth A]	C [auth A], E [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain D [auth A] mmCIF format, chain F [auth B] mmCIF format, chain D [auth A]	D [auth A], F [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free: 0.259 (Depositor), 0.255 (DCC)
R-Value Work: 0.198 (Depositor), 0.206 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 160.475	α = 90
b = 56.758	β = 95.85
c = 82.388	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-12-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2020-12-30
Type: Initial release
Version 1.1: 2022-02-23
Changes: Database references
Version 1.2: 2023-11-22
Changes: Data collection, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.