RVD HA specifically contacts 5mC through van der Waals interactions
Liu, L., Yi, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
TAL effector | A, D [auth B] | 499 | Xanthomonas campestris pv. armoraciae | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q3ZD72 (Xanthomonas campestris pv. armoraciae) Explore Q3ZD72  Go to UniProtKB:  Q3ZD72 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3ZD72 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3') | B [auth I], E [auth C] | 17 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3') | C [auth J], F [auth D] | 17 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 85.786 | α = 90 |
b = 88.022 | β = 104.77 |
c = 89.349 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China | China | 21825701 |
National Natural Science Foundation of China | China | 91740112 |