Structural basis for the full and partial agonist activities of retinoid X receptor alpha ligands with an iso-butoxy and an isopropyl group
Imai, D., Numoto, N., Tokiwa, H., Kakuta, H., Ito, N.(2024) Biochem Biophys Res Commun 734: 150617
Experimental Data Snapshot
Starting Model: experimental
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(2024) Biochem Biophys Res Commun 734: 150617
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Retinoic acid receptor RXR-alpha | 243 | Homo sapiens | Mutation(s): 0 Gene Names: RXRA, NR2B1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P19793 (Homo sapiens) Explore P19793 Go to UniProtKB: P19793 | |||||
PHAROS: P19793 GTEx: ENSG00000186350 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P19793 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nuclear receptor coactivator 2 | 13 | Homo sapiens | Mutation(s): 0 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15596 (Homo sapiens) Explore Q15596 Go to UniProtKB: Q15596 | |||||
PHAROS: Q15596 GTEx: ENSG00000140396 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15596 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
E80 (Subject of Investigation/LOI) Query on E80 | E [auth A], F [auth C] | 6-[ethyl-[3-(2-methylpropoxy)-4-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid C21 H28 N2 O3 JUCWZKDTWSKUAW-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 177.411 | α = 90 |
b = 64.026 | β = 92.771 |
c = 46.631 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |