6KYX | pdb_00006kyx

Crystal Structure of Staphylococcus aureus response regulator ArlR DNA binding domain with His tag cleaved

PDB DOI: https://doi.org/10.2210/pdb6KYX/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-09-20 Released: 2020-09-23
Deposition Author(s): Wen, Y., Ouyang, Z.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.250 (Depositor), 0.251 (DCC)
R-Value Work:
0.200 (Depositor), 0.201 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6KYX

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Staphylococcus aureus response regulator ArlR DNA binding domain

Wen, Y., Ouyang, Z.

To be published.

Macromolecule Content

Total Structure Weight: 11.68 kDa
Atom Count: 879
Modeled Residue Count: 100
Deposited Residue Count: 100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-binding response regulator ArlR	A	100	Staphylococcus aureus	Mutation(s): 0 Gene Names: ER627_12465
UniProt
Find proteins for Q9KJN4 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q9KJN4 Go to UniProtKB: Q9KJN4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KJN4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.250 (Depositor), 0.251 (DCC)
R-Value Work: 0.200 (Depositor), 0.201 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.06	α = 90
b = 68.06	β = 90
c = 152.63	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-09-23

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	NO.31870132, NO.81741088 and NO.31500051

Revision History (Full details and data files)

Version 1.0: 2020-09-23
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.