6K4M

Cryo-EM structure of Holo-bacterioferritin form-II from Streptomyces coelicolor


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of Bacterioferritin from Streptomyces coelicolor

Jobichen, C.Sivaraman, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bacterioferritin
A,
B,
C,
D,
E [auth F],
F [auth E],
G,
H,
I,
J,
K,
L,
M,
N,
O,
P,
Q,
R,
S,
T,
U,
V,
W,
X
167Streptomyces coelicolorMutation(s): 0 
EC: 1.16.3.1
UniProt
Find proteins for Q9S2N0 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore Q9S2N0 
Go to UniProtKB:  Q9S2N0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9S2N0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download Ideal Coordinates CCD File 
CA [auth C]
CB [auth U]
FA [auth F]
FB [auth W]
GB [auth X]
CA [auth C],
CB [auth U],
FA [auth F],
FB [auth W],
GB [auth X],
JA [auth H],
MA [auth K],
PA [auth L],
UA [auth P],
WA [auth R],
Z [auth A],
ZA [auth S]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
FE2
Query on FE2

Download Ideal Coordinates CCD File 
AA [auth B]
AB [auth T]
BA [auth C]
BB [auth U]
DA [auth D]
AA [auth B],
AB [auth T],
BA [auth C],
BB [auth U],
DA [auth D],
DB [auth V],
EA [auth F],
EB [auth W],
GA [auth E],
HA [auth G],
HB [auth X],
IA [auth H],
KA [auth I],
LA [auth J],
NA [auth K],
OA [auth L],
QA [auth M],
RA [auth N],
SA [auth O],
TA [auth P],
VA [auth Q],
XA [auth R],
Y [auth A],
YA [auth S]
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcisTEM
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-03
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references, Refinement description