6K30 | pdb_00006k30

Binding pose 2 of 2-CF3 bound AsqJ complex

PDB DOI: https://doi.org/10.2210/pdb6K30/pdb

Classification: OXIDOREDUCTASE
Organism(s): Aspergillus nidulans FGSC A4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-05-15 Released: 2020-03-18
Deposition Author(s): Liao, H.J., Chan, N.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.68 Å
R-Value Free:
0.250 (Depositor), 0.213 (DCC)
R-Value Work:
0.167 (Depositor), 0.181 (DCC)
R-Value Observed:
0.176 (Depositor)

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Literature

Binding pose 2 of 2-CF3 bound AsqJ complex

Liao, H.J., Chan, N.L.

(2020) J Am Chem Soc

Macromolecule Content

Total Structure Weight: 36.63 kDa
Atom Count: 2,265
Modeled Residue Count: 287
Deposited Residue Count: 327
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Iron/alpha-ketoglutarate-dependent dioxygenase asqJ	A [auth B]	327	Aspergillus nidulans FGSC A4	Mutation(s): 0 Gene Names: asqJ, AN9227 EC: 1.14 (PDB Primary Data), 1.14.11.81 (UniProt)
UniProt
Find proteins for Q5AR53 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)) Explore Q5AR53 Go to UniProtKB: Q5AR53
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5AR53
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CV3 (Subject of Investigation/LOI) Query on CV3 Download:Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B] mmCIF format, chain C [auth B]	C [auth B]	(3~{Z})-4-methyl-3-[[4-(trifluoromethyl)phenyl]methylidene]-1~{H}-1,4-benzodiazepine-2,5-dione C₁₈ H₁₃ F₃ N₂ O₂ NVEJUUHKRHQWHW-GDNBJRDFSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]
SIN Query on SIN Download:Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B] mmCIF format, chain D [auth B]	D [auth B]	SUCCINIC ACID C₄ H₆ O₄ KDYFGRWQOYBRFD-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B MOL2 format, chain B mmCIF format, chain B	B	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B Interactions & Density Focus chain B

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.68 Å
R-Value Free: 0.250 (Depositor), 0.213 (DCC)
R-Value Work: 0.167 (Depositor), 0.181 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.224	α = 90
b = 118.434	β = 90
c = 67.336	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-03-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-03-18
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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