6JIC | pdb_00006jic

Identification and Characterization of a carboxypeptidase inhibitor from Lycium barbarum


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Identification and characterization of a wolfberry carboxypeptidase inhibitor from Lycium barbarum.

Huang, J.Wong, K.H.Tan, W.L.Tay, S.V.Wang, S.Tam, J.P.

(2021) Food Chem 351: 129338-129338

  • DOI: https://doi.org/10.1016/j.foodchem.2021.129338
  • Primary Citation Related Structures: 
    6JIC

  • PubMed Abstract: 

    Hyperstable cysteine-rich peptides (CRPs) represent an underexplored superfamily of bioactives in functional foods. An example is wolfberry of the Lycium barbarum family. Previously, we discovered a CRP, designated α-lybatide, from L. barbarum bark. Herein, we report the discovery of β-lybatide, a novel carboxypeptidase inhibitor belonging to a different CRP family from the wolfberry plant. Proteomic and transcriptomic analyses showed that β-lybatide contains 36 amino acids with six cysteine residues. NMR spectroscopy revealed that β-lybatide displays a knottin-like structure that renders it highly resistant to thermal, chemical and enzymatic degradation, conditions important for keeping its structural integrity in gastrointestinal tract. Biochemical assays showed that β-lybatide is a potent carboxypeptidase inhibitor which could contribute to the wolfberry biological activities. Bioinformatics analysis revealed an additional 49 β-lybatide-like plant carboxypeptidase inhibitors. Together, our results show that β-lybatide is the first and the smallest plant-derived hyperstable carboxypeptidase inhibitor discovered from a functional food.


  • Organizational Affiliation
    • School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore. Electronic address: huan0273@e.ntu.edu.sg.

Macromolecule Content 

  • Total Structure Weight: 4.02 kDa 
  • Atom Count: 275 
  • Modeled Residue Count: 36 
  • Deposited Residue Count: 36 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
WCI36Lycium barbarumMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education (Singapore)SingaporeMOE-2016-T3-1-003

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-26
    Type: Initial release
  • Version 1.1: 2021-03-10
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2024-11-06
    Changes: Data collection, Database references, Structure summary