6J3A | pdb_00006j3a

Structure of LmbA2991HD

PDB DOI: https://doi.org/10.2210/pdb6J3A/pdb

Classification: TRANSFERASE
Organism(s): Streptomyces lincolnensis
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2019-01-04 Released: 2020-01-15
Deposition Author(s): Song, Y.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free:
0.267 (Depositor), 0.274 (DCC)
R-Value Work:
0.224 (Depositor), 0.228 (DCC)
R-Value Observed:
0.226 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6J3A

This is version 1.1 of the entry. See complete history.

Literature

Structure of LmbA2991HD

Song, Y.

To be published.

Macromolecule Content

Total Structure Weight: 130.31 kDa
Atom Count: 8,828
Modeled Residue Count: 1,160
Deposited Residue Count: 1,234
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-glutamyltranspeptidase	A, B	617	Streptomyces lincolnensis	Mutation(s): 0 Gene Names: SLCG_6815, SLINC_6827
UniProt
Find proteins for A0A1B1MKD3 (Streptomyces lincolnensis) Explore A0A1B1MKD3 Go to UniProtKB: A0A1B1MKD3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1B1MKD3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free: 0.267 (Depositor), 0.274 (DCC)
R-Value Work: 0.224 (Depositor), 0.228 (DCC)
R-Value Observed: 0.226 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.44	α = 90
b = 113.177	β = 90
c = 116.527	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	21520102004, 31430005, 81302674 and 21472231

Revision History (Full details and data files)

Version 1.0: 2020-01-15
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.