6IXH | pdb_00006ixh

Type VI secretion system membrane core complex

PDB DOI: https://doi.org/10.2210/pdb6IXH/pdb
EM Map EMD-9747: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Escherichia coli 55989
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-12-10 Released: 2019-01-23
Deposition Author(s): Yin, M., Yan, Z.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6IXH

This is version 1.3 of the entry. See complete history.

Literature

Architecture of type VI secretion system membrane core complex.

Yin, M., Yan, Z., Li, X.

(2019) Cell Res 29: 251-253

PubMed: 30647412 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1038/s41422-018-0130-7
Primary Citation Related Structures:
6IXH

Organizational Affiliation

Key Laboratory of Protein Sciences (Tsinghua University), Ministry of Education, Beijing, China.

Macromolecule Content

Total Structure Weight: 1,560.2 kDa
Atom Count: 52,280
Modeled Residue Count: 6,785
Deposited Residue Count: 13,960
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type VI Secretion System TssJ	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	178	Escherichia coli 55989	Mutation(s): 0 Gene Names: EC55989_3320
UniProt
Find proteins for B7LFS8 (Escherichia coli (strain 55989 / EAEC)) Explore B7LFS8 Go to UniProtKB: B7LFS8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B7LFS8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Type VI Secretion System TssM	P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	1,129	Escherichia coli 55989	Mutation(s): 0 Gene Names: EC55989_3325
UniProt
Find proteins for B7LFU0 (Escherichia coli (strain 55989 / EAEC)) Explore B7LFU0 Go to UniProtKB: B7LFU0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B7LFU0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-01-23

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31722015 and 31570730

Revision History (Full details and data files)

Version 1.0: 2019-01-23
Type: Initial release
Version 1.1: 2019-01-30
Changes: Data collection, Database references
Version 1.2: 2019-03-13
Changes: Data collection, Database references
Version 1.3: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.