6IUL | pdb_00006iul

Crystal structure of Lamprey immune protein

PDB DOI: https://doi.org/10.2210/pdb6IUL/pdb

Classification: ANTITUMOR PROTEIN
Organism(s): Lethenteron camtschaticum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-29 Released: 2019-12-04
Deposition Author(s): Li, Q.W., Pang, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å
R-Value Free:
0.232 (Depositor), 0.233 (DCC)
R-Value Work:
0.198 (Depositor), 0.204 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6IUL

This is version 1.1 of the entry. See complete history.

Literature

Structure of a pore-forming protein

Li, Q.W., Pang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 68.68 kDa
Atom Count: 5,134
Modeled Residue Count: 628
Deposited Residue Count: 628
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Natterin-like protein	A, B	314	Lethenteron camtschaticum	Mutation(s): 0
UniProt
Find proteins for K7WEH5 (Lethenteron camtschaticum) Explore K7WEH5 Go to UniProtKB: K7WEH5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	K7WEH5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å
R-Value Free: 0.232 (Depositor), 0.233 (DCC)
R-Value Work: 0.198 (Depositor), 0.204 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.257	α = 90
b = 103.257	β = 90
c = 166.209	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
DENZO	data reduction
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-12-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-12-04
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.