6IPX

Crystal structure of the apo form transcription factor

PDB DOI: https://doi.org/10.2210/pdb6IPX/pdb

Classification: TRANSCRIPTION REGULATOR
Organism(s): Spbetavirus SPbeta
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-11-05 Released: 2019-01-23
Deposition Author(s): Oy, S.Y., Zhen, X., Zhou, H., Ding, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.63 Å
R-Value Free: 0.282
R-Value Work: 0.230
R-Value Observed: 0.233

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages.

Zhen, X., Zhou, H., Ding, W., Zhou, B., Xu, X., Perculija, V., Chen, C.J., Chang, M.X., Choudhary, M.I., Ouyang, S.

(2019) Protein Cell 10: 131-136

PubMed: 30421358 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1007/s13238-018-0588-6
Primary Citation of Related Structures:
6IM4, 6IPX

Organizational Affiliation

The Key Laboratory of Innate Immune Biology of Fujian Province, Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, China.

Macromolecule Content

Total Structure Weight: 91.7 kDa
Atom Count: 6,415
Modelled Residue Count: 778
Deposited Residue Count: 780
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AimR transcriptional regulator	A, B	390	Spbetavirus SPbeta	Mutation(s): 0 Gene Names: aimR, yopK
UniProt
Find proteins for O64094 (Bacillus phage SPbeta) Explore O64094 Go to UniProtKB: O64094
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O64094
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.63 Å
R-Value Free: 0.282
R-Value Work: 0.230
R-Value Observed: 0.233
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.46	α = 90
b = 214.71	β = 90
c = 33.7	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-01-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-01-23
Type: Initial release
Version 1.1: 2019-02-06
Changes: Data collection, Database references
Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description