6IP6

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

HCV IRES Captures an Actively Translating 80S Ribosome.

Yokoyama, T., Machida, K., Iwasaki, W., Shigeta, T., Nishimoto, M., Takahashi, M., Sakamoto, A., Yonemochi, M., Harada, Y., Shigematsu, H., Shirouzu, M., Tadakuma, H., Imataka, H., Ito, T.

(2019) Mol Cell 74: 1205-1214.e8

  • DOI: https://doi.org/10.1016/j.molcel.2019.04.022
  • Primary Citation of Related Structures:  
    6IP5, 6IP6, 6IP8

  • PubMed Abstract: 

    Translation initiation of hepatitis C virus (HCV) genomic RNA is induced by an internal ribosome entry site (IRES). Our cryoelectron microscopy (cryo-EM) analysis revealed that the HCV IRES binds to the solvent side of the 40S platform of the cap-dependently translating 80S ribosome. Furthermore, we obtained the cryo-EM structures of the HCV IRES capturing the 40S subunit of the IRES-dependently translating 80S ribosome. In the elucidated structures, the HCV IRES "body," consisting of domain III except for subdomain IIIb, binds to the 40S subunit, while the "long arm," consisting of domain II, remains flexible and does not impede the ongoing translation. Biochemical experiments revealed that the cap-dependently translating ribosome becomes a better substrate for the HCV IRES than the free ribosome. Therefore, the HCV IRES is likely to efficiently induce the translation initiation of its downstream mRNA with the captured translating ribosome as soon as the ongoing translation terminates.

    • Organizational Affiliation: 

    RIKEN Center for Biosystems Dynamics Research, Tsurumi-ku, Yokohama 230-0045, Japan; Division of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, Tsurumi-ku, Yokohama 230-0045, Japan.


Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8D [auth 1D]257Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens)
Explore P62917 
Go to UniProtKB:  P62917
GTEx:  ENSG00000161016 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62917
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3E [auth 1E]403Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P39023 (Homo sapiens)
Explore P39023 
Go to UniProtKB:  P39023
PHAROS:  P39023
GTEx:  ENSG00000100316 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39023
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4F [auth 1F]427Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens)
Explore P36578 
Go to UniProtKB:  P36578
PHAROS:  P36578
GTEx:  ENSG00000174444 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36578
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5G [auth 1G]297Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46777 (Homo sapiens)
Explore P46777 
Go to UniProtKB:  P46777
PHAROS:  P46777
GTEx:  ENSG00000122406 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46777
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6H [auth 1H]288Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens)
Explore Q02878 
Go to UniProtKB:  Q02878
PHAROS:  Q02878
GTEx:  ENSG00000089009 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02878
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7I [auth 2A]248Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P18124 (Homo sapiens)
Explore P18124 
Go to UniProtKB:  P18124
PHAROS:  P18124
GTEx:  ENSG00000147604 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18124
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aJ [auth 2B]266Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens)
Explore P62424 
Go to UniProtKB:  P62424
PHAROS:  P62424
GTEx:  ENSG00000148303 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62424
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9K [auth 2C]192Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens)
Explore P32969 
Go to UniProtKB:  P32969
PHAROS:  P32969
GTEx:  ENSG00000163682 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32969
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10-likeL [auth 2D]214Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L21 (Homo sapiens)
Explore Q96L21 
Go to UniProtKB:  Q96L21
PHAROS:  Q96L21
GTEx:  ENSG00000165496 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96L21
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11M [auth 2E]178Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens)
Explore P62913 
Go to UniProtKB:  P62913
PHAROS:  P62913
GTEx:  ENSG00000142676 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62913
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13N [auth 2F]211Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens)
Explore P26373 
Go to UniProtKB:  P26373
PHAROS:  P26373
GTEx:  ENSG00000167526 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26373
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14O [auth 2G]215Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P50914 (Homo sapiens)
Explore P50914 
Go to UniProtKB:  P50914
PHAROS:  P50914
GTEx:  ENSG00000188846 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP50914
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15P [auth 2H]204Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens)
Explore P61313 
Go to UniProtKB:  P61313
PHAROS:  P61313
GTEx:  ENSG00000174748 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61313
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aQ [auth 2I]203Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens)
Explore P40429 
Go to UniProtKB:  P40429
PHAROS:  P40429
GTEx:  ENSG00000142541 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40429
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17R [auth 2J]184Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens)
Explore P18621 
Go to UniProtKB:  P18621
PHAROS:  P18621
GTEx:  ENSG00000265681 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18621
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18S [auth 2K]188Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens)
Explore Q07020 
Go to UniProtKB:  Q07020
PHAROS:  Q07020
GTEx:  ENSG00000063177 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07020
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19T [auth 2L]196Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens)
Explore P84098 
Go to UniProtKB:  P84098
PHAROS:  P84098
GTEx:  ENSG00000108298 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP84098
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aU [auth 2M]176Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens)
Explore Q02543 
Go to UniProtKB:  Q02543
GTEx:  ENSG00000105640 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02543
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21V [auth 2N]160Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens)
Explore P46778 
Go to UniProtKB:  P46778
PHAROS:  P46778
GTEx:  ENSG00000122026 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46778
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22W [auth 2O]128Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P35268 (Homo sapiens)
Explore P35268 
Go to UniProtKB:  P35268
PHAROS:  P35268
GTEx:  ENSG00000116251 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35268
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23X [auth 2P]140Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens)
Explore P62829 
Go to UniProtKB:  P62829
PHAROS:  P62829
GTEx:  ENSG00000125691 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62829
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24Y [auth 2Q]157Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P83731 (Homo sapiens)
Explore P83731 
Go to UniProtKB:  P83731
PHAROS:  P83731
GTEx:  ENSG00000114391 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83731
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aZ [auth 2R]156Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens)
Explore P62750 
Go to UniProtKB:  P62750
PHAROS:  P62750
GTEx:  ENSG00000198242 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62750
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26AA [auth 2S]145Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens)
Explore P61254 
Go to UniProtKB:  P61254
PHAROS:  P61254
GTEx:  ENSG00000161970 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61254
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27BA [auth 2T]136Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens)
Explore P61353 
Go to UniProtKB:  P61353
PHAROS:  P61353
GTEx:  ENSG00000131469 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61353
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aCA [auth 2U]148Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens)
Explore P46776 
Go to UniProtKB:  P46776
PHAROS:  P46776
GTEx:  ENSG00000166441 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46776
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29DA [auth 2V]159Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P47914 (Homo sapiens)
Explore P47914 
Go to UniProtKB:  P47914
GTEx:  ENSG00000162244 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47914
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EA [auth 2W]115Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens)
Explore P62888 
Go to UniProtKB:  P62888
PHAROS:  P62888
GTEx:  ENSG00000156482 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62888
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31FA [auth 2X]125Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens)
Explore P62899 
Go to UniProtKB:  P62899
PHAROS:  P62899
GTEx:  ENSG00000071082 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62899
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32GA [auth 2Y]135Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens)
Explore P62910 
Go to UniProtKB:  P62910
PHAROS:  P62910
GTEx:  ENSG00000144713 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62910
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aHA [auth 2Z]110Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens)
Explore P18077 
Go to UniProtKB:  P18077
PHAROS:  P18077
GTEx:  ENSG00000182899 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18077
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34IA [auth 2a]117Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens)
Explore P49207 
Go to UniProtKB:  P49207
PHAROS:  P49207
GTEx:  ENSG00000109475 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49207
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35JA [auth 2b]123Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens)
Explore P42766 
Go to UniProtKB:  P42766
PHAROS:  P42766
GTEx:  ENSG00000136942 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42766
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36KA [auth 2c]105Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens)
Explore Q9Y3U8 
Go to UniProtKB:  Q9Y3U8
PHAROS:  Q9Y3U8
GTEx:  ENSG00000130255 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y3U8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37LA [auth 2d]97Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens)
Explore P61927 
Go to UniProtKB:  P61927
PHAROS:  P61927
GTEx:  ENSG00000145592 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61927
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38MA [auth 2e]70Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens)
Explore P63173 
Go to UniProtKB:  P63173
PHAROS:  P63173
GTEx:  ENSG00000172809 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63173
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39NA [auth 2f]51Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62891 (Homo sapiens)
Explore P62891 
Go to UniProtKB:  P62891
GTEx:  ENSG00000198918 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62891
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40OA [auth 2g]128Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62987 (Homo sapiens)
Explore P62987 
Go to UniProtKB:  P62987
PHAROS:  P62987
GTEx:  ENSG00000221983 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62987
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41PA [auth 2h]25Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62945 (Homo sapiens)
Explore P62945 
Go to UniProtKB:  P62945
PHAROS:  P62945
GTEx:  ENSG00000229117 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62945
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36aQA [auth 2i]106Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P83881 (Homo sapiens)
Explore P83881 
Go to UniProtKB:  P83881
PHAROS:  P83881
GTEx:  ENSG00000241343 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83881
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aRA [auth 2j]92Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens)
Explore P61513 
Go to UniProtKB:  P61513
PHAROS:  P61513
GTEx:  ENSG00000197756 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61513
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28SA [auth 2k]137Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens)
Explore P46779 
Go to UniProtKB:  P46779
PHAROS:  P46779
GTEx:  ENSG00000108107 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46779
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAUA [auth 2n]295Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P08865 (Homo sapiens)
Explore P08865 
Go to UniProtKB:  P08865
PHAROS:  P08865
GTEx:  ENSG00000168028 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08865
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aVA [auth 2o]264Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61247 (Homo sapiens)
Explore P61247 
Go to UniProtKB:  P61247
GTEx:  ENSG00000145425 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61247
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3WA [auth 2p]243Homo sapiensMutation(s): 0 
EC: 4.2.99.18
UniProt & NIH Common Fund Data Resources
Find proteins for P23396 (Homo sapiens)
Explore P23396 
Go to UniProtKB:  P23396
PHAROS:  P23396
GTEx:  ENSG00000149273 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23396
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4, X isoformXA [auth 2q]263Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62701 (Homo sapiens)
Explore P62701 
Go to UniProtKB:  P62701
PHAROS:  P62701
GTEx:  ENSG00000198034 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62701
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5YA [auth 2r]204Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46782 (Homo sapiens)
Explore P46782 
Go to UniProtKB:  P46782
PHAROS:  P46782
GTEx:  ENSG00000083845 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46782
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7ZA [auth 2s]194Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62081 (Homo sapiens)
Explore P62081 
Go to UniProtKB:  P62081
PHAROS:  P62081
GTEx:  ENSG00000171863 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62081
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8AB [auth 2t]208Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62241 (Homo sapiens)
Explore P62241 
Go to UniProtKB:  P62241
PHAROS:  P62241
GTEx:  ENSG00000142937 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62241
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10BB [auth 2u]165Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46783 (Homo sapiens)
Explore P46783 
Go to UniProtKB:  P46783
PHAROS:  P46783
GTEx:  ENSG00000124614 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46783
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11CB [auth 2v]158Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62280 (Homo sapiens)
Explore P62280 
Go to UniProtKB:  P62280
PHAROS:  P62280
GTEx:  ENSG00000142534 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62280
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15DB [auth 2w]145Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62841 (Homo sapiens)
Explore P62841 
Go to UniProtKB:  P62841
PHAROS:  P62841
GTEx:  ENSG00000115268 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62841
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16EB [auth 2x]146Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62249 (Homo sapiens)
Explore P62249 
Go to UniProtKB:  P62249
PHAROS:  P62249
GTEx:  ENSG00000105193 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62249
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17FB [auth 2y]135Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P08708 (Homo sapiens)
Explore P08708 
Go to UniProtKB:  P08708
PHAROS:  P08708
GTEx:  ENSG00000182774 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08708
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18GB [auth 2z]152Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62269 (Homo sapiens)
Explore P62269 
Go to UniProtKB:  P62269
PHAROS:  P62269
GTEx:  ENSG00000231500 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62269
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19HB [auth 20]145Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P39019 (Homo sapiens)
Explore P39019 
Go to UniProtKB:  P39019
PHAROS:  P39019
GTEx:  ENSG00000105372 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39019
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20IB [auth 21]119Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P60866 (Homo sapiens)
Explore P60866 
Go to UniProtKB:  P60866
PHAROS:  P60866
GTEx:  ENSG00000008988 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60866
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21JB [auth 3A]83Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P63220 (Homo sapiens)
Explore P63220 
Go to UniProtKB:  P63220
PHAROS:  P63220
GTEx:  ENSG00000171858 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63220
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23KB [auth 3B]143Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62266 (Homo sapiens)
Explore P62266 
Go to UniProtKB:  P62266
PHAROS:  P62266
GTEx:  ENSG00000186468 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62266
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26LB [auth 3C]115Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62854 (Homo sapiens)
Explore P62854 
Go to UniProtKB:  P62854
PHAROS:  P62854
GTEx:  ENSG00000197728 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62854
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28MB [auth 3D]69Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62857 (Homo sapiens)
Explore P62857 
Go to UniProtKB:  P62857
PHAROS:  P62857
GTEx:  ENSG00000233927 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62857
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29NB [auth 3E]56Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62273 (Homo sapiens)
Explore P62273 
Go to UniProtKB:  P62273
PHAROS:  P62273
GTEx:  ENSG00000213741 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62273
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1OB [auth 3F]317Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P63244 (Homo sapiens)
Explore P63244 
Go to UniProtKB:  P63244
PHAROS:  P63244
GTEx:  ENSG00000204628 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63244
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2PB [auth 3G]293Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P15880 (Homo sapiens)
Explore P15880 
Go to UniProtKB:  P15880
PHAROS:  P15880
GTEx:  ENSG00000140988 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15880
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6QB [auth 3H]249Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62753 (Homo sapiens)
Explore P62753 
Go to UniProtKB:  P62753
PHAROS:  P62753
GTEx:  ENSG00000137154 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62753
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9RB [auth 3I]194Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46781 (Homo sapiens)
Explore P46781 
Go to UniProtKB:  P46781
PHAROS:  P46781
GTEx:  ENSG00000170889 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46781
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12SB [auth 3J]132Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P25398 (Homo sapiens)
Explore P25398 
Go to UniProtKB:  P25398
PHAROS:  P25398
GTEx:  ENSG00000112306 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25398
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13TB [auth 3K]151Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62277 (Homo sapiens)
Explore P62277 
Go to UniProtKB:  P62277
PHAROS:  P62277
GTEx:  ENSG00000110700 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62277
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14UB [auth 3L]151Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62263 (Homo sapiens)
Explore P62263 
Go to UniProtKB:  P62263
PHAROS:  P62263
GTEx:  ENSG00000164587 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62263
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15aVB [auth 3M]130Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62244 (Homo sapiens)
Explore P62244 
Go to UniProtKB:  P62244
PHAROS:  P62244
GTEx:  ENSG00000134419 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62244
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24WB [auth 3N]133Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62847 (Homo sapiens)
Explore P62847 
Go to UniProtKB:  P62847
PHAROS:  P62847
GTEx:  ENSG00000138326 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62847
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25XB [auth 3O]125Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62851 (Homo sapiens)
Explore P62851 
Go to UniProtKB:  P62851
PHAROS:  P62851
GTEx:  ENSG00000118181 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62851
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27YB [auth 3P]84Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P42677 (Homo sapiens)
Explore P42677 
Go to UniProtKB:  P42677
PHAROS:  P42677
GTEx:  ENSG00000177954 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42677
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30ZB [auth 3Q]59Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62861 (Homo sapiens)
Explore P62861 
Go to UniProtKB:  P62861
PHAROS:  P62861
GTEx:  ENSG00000149806 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62861
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aAC [auth 3R]156Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62979 (Homo sapiens)
Explore P62979 
Go to UniProtKB:  P62979
PHAROS:  P62979
GTEx:  ENSG00000143947 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62979
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
nascent peptideCC [auth zx]17Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains LengthOrganismImage
28S ribosomal RNAA [auth 1A]5,070Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
5S ribosomal RNAB [auth 1B]121Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAC [auth 1C]157Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChains LengthOrganismImage
18S ribosomal RNATA [auth 2m]1,869Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 80
MoleculeChains LengthOrganismImage
mRNABC [auth zv]6Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 82
MoleculeChains LengthOrganismImage
P-site tRNADC [auth zy]75Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 83
MoleculeChains LengthOrganismImage
HCV-IRES RNAEC [auth zz]290Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan--

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-29
    Type: Initial release
  • Version 1.1: 2019-07-03
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-06
    Changes: Data collection, Other
  • Version 1.3: 2024-10-23
    Changes: Data collection, Database references, Structure summary