6HR0 | pdb_00006hr0

Optimizing electroactive organisms: the effect of orthologous proteins

• PDB DOI: https://doi.org/10.2210/pdb6HR0/pdb

• Classification: ELECTRON TRANSPORT
• Organism(s): Shewanella algae
• Expression System: Shewanella algae
• Mutation(s): No 


• Deposited: 2018-09-26 Released: 2019-10-16 
• Deposition Author(s): Trindade, I.B., Moe, E., Matias, P.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.04 Å
• R-Value Free: 
  0.178 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.152 (Depositor), 0.150 (DCC) 

Starting Model: experimental

Literature

Optimizing electroactive organisms: the effect of orthologous proteins

Fonseca, B.M., Silva, L., Trindade, I.B., Moe, E., Matias, P.M., Louro, R.O., Paquete, C.M.

(2019) Front Energy Res 

• DOI: https://doi.org/10.3389/fenrg.2019.00002

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 12.15 kDa 
• Atom Count: 1,047 
• Modelled Residue Count: 90 
• Deposited Residue Count: 90 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome C	A	90	Shewanella algae	Mutation(s): 0  Gene Names: EEY24_16120
UniProt
Find proteins for A0A2T3H499 (Shewanella algae) Explore A0A2T3H499  Go to UniProtKB:  A0A2T3H499

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEC (Subject of Investigation/LOI)	B [auth A], C [auth A], D [auth A], E [auth A]	HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N
PO3	F [auth A]	PHOSPHITE ION O3 P AQSJGOWTSHOLKH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.04 Å
• R-Value Free:  0.178 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.152 (Depositor), 0.150 (DCC) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.171	α = 90
b = 66.171	β = 90
c = 43.236	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-10-16 
Deposition Author(s): Trindade, I.B., Moe, E., Matias, P.

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Funding Organization	Location	Grant Number
Other government	Portugal	PTDC/BBB-BQB/4178/2014
Other government	Portugal	PTDC/BBB-BQB/3554/2014
Other government	Portugal	ERA-MBT/0003/2014
Other government	Portugal	SFRH/BPD/96952/2013
Other government	Portugal	SFRH/BPD/93164/2013
Other government	Portugal	SFRH/BPD/93164/2013
Other government	Portugal	PD/BD/135187/2017

Revision History  

• Version 1.0: 2019-10-16
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.2: 2024-10-16
  Changes: Structure summary