6HBS

Structure of PLP internal aldimine form of Sphingopyxis sp. MTA144 FumI protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Structure of PLP internal aldimine form of Sphingopyxis sp. MTA144 FumI protein

Campopiano, D.J.Serpico, A.Marles-Wright, J.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aminopentol aminotransferase
A, B
440Sphingopyxis macrogoltabidaMutation(s): 0 
Gene Names: fumI
EC: 2.6.1
UniProt
Find proteins for D2D3B2 (Sphingopyxis macrogoltabida)
Explore D2D3B2 
Go to UniProtKB:  D2D3B2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD2D3B2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.18α = 90
b = 104.419β = 109.26
c = 65.25γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-28
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Derived calculations, Refinement description