6GIC | pdb_00006gic

Crystal structure of glutathione transferase Omega 2S from Trametes versicolor in complex with oxyresveratrol

• PDB DOI: https://doi.org/10.2210/pdb6GIC/pdb

• Classification: TRANSFERASE
• Organism(s): Trametes versicolor
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-05-10 Released: 2018-09-12 
• Deposition Author(s): Schwartz, M., Favier, F., Didierjean, C.
• Funding Organization(s): French National Research Agency

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.252 (Depositor), 0.257 (DCC) 
• R-Value Work: 
  0.193 (Depositor), 0.196 (DCC) 
• R-Value Observed: 
  0.196 (Depositor) 

Starting Model: experimental

Literature

Fungal glutathione transferases as tools to explore the chemical diversity of Amazonian wood extractives

Perrot, T., Schwartz, M., Saiag, F., Salzet, G., Dumarcay, S., Favier, F., Gerardin, P., Girardet, J.-M., Sormani, R., Morel-Rouhier, M., Amusant, N., Didierjean, C., Gelhaye, E.

(2018) Acs Sust Chem Eng 

• DOI: https://doi.org/10.1021/acssuschemeng.8b02636

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Macromolecule Content 

• Total Structure Weight: 55.17 kDa 
• Atom Count: 3,790 
• Modeled Residue Count: 466 
• Deposited Residue Count: 490 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione transferase Omega 2S	A, B	245	Trametes versicolor	Mutation(s): 0
UniProt
Find proteins for A0A452CSY5 (Trametes versicolor) Explore A0A452CSY5  Go to UniProtKB:  A0A452CSY5

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EZH	E [auth B]	cis-oxyresveratrol C14 H12 O4 PDHAOJSHSJQANO-UPHRSURJSA-N
EZE	D [auth B]	trans-oxyresveratrol C14 H12 O4 PDHAOJSHSJQANO-OWOJBTEDSA-N
MG	C [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.252 (Depositor), 0.257 (DCC) 
• R-Value Work:  0.193 (Depositor), 0.196 (DCC) 
• R-Value Observed: 0.196 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.612	α = 90
b = 93.903	β = 90
c = 95.8	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2018-09-12 
Deposition Author(s): Schwartz, M., Favier, F., Didierjean, C.

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Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-11-LAS-0002-01

Revision History  

• Version 1.0: 2018-09-12
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Derived calculations, Refinement description