6GIB | pdb_00006gib

Crystal structure of glutathione transferase Omega 2S from Trametes versicolor

PDB DOI: https://doi.org/10.2210/pdb6GIB/pdb

Classification: TRANSFERASE
Organism(s): Trametes versicolor
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-05-10 Released: 2018-09-12
Deposition Author(s): Schwartz, M., Favier, F., Didierjean, C.
Funding Organization(s): French National Research Agency

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free:
0.258 (Depositor), 0.262 (DCC)
R-Value Work:
0.196 (Depositor), 0.200 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Fungal glutathione transferases as tools to explore the chemical diversity of Amazonian wood extractives

Perrot, T., Schwartz, M., Saiag, F., Salzet, G., Dumarcay, S., Favier, F., Gerardin, P., Girardet, J.-M., Sormani, R., Morel-Rouhier, M., Amusant, N., Didierjean, C., Gelhaye, E.

(2018) Acs Sust Chem Eng

DOI: https://doi.org/10.1021/acssuschemeng.8b02636

Macromolecule Content

Total Structure Weight: 54.68 kDa
Atom Count: 3,724
Modeled Residue Count: 468
Deposited Residue Count: 490
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase omega-2	A, B	245	Trametes versicolor	Mutation(s): 0 Gene Names: TRAPUB_12770
UniProt
Find proteins for A0A452CSY5 (Trametes versicolor) Explore A0A452CSY5 Go to UniProtKB: A0A452CSY5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A452CSY5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B] mmCIF format, chain C [auth B]	C [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free: 0.258 (Depositor), 0.262 (DCC)
R-Value Work: 0.196 (Depositor), 0.200 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.959	α = 90
b = 93.023	β = 90
c = 96.024	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-09-12

Deposition Author(s):

Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-11-LAS-0002-01

Revision History (Full details and data files)

Version 1.0: 2018-09-12
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.